Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   QMM27_RS00835 Genome accession   NZ_AP025939
Coordinates   157816..158409 (+) Length   197 a.a.
NCBI ID   WP_000271486.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Utah_35B-24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 152816..163409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM27_RS00815 (Utah35B_01510) ribE 153998..154465 (-) 468 WP_001099502.1 6,7-dimethyl-8-ribityllumazine synthase -
  QMM27_RS00820 (Utah35B_01520) - 154466..155671 (-) 1206 WP_016399605.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  QMM27_RS00825 (Utah35B_01530) ribE 155691..156326 (-) 636 WP_016398423.1 riboflavin synthase -
  QMM27_RS00830 (Utah35B_01540) ribD 156311..157411 (-) 1101 WP_001284109.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  QMM27_RS00835 (Utah35B_01550) ruvA 157816..158409 (+) 594 WP_000271486.1 Holliday junction branch migration protein RuvA Machinery gene
  QMM27_RS00840 (Utah35B_01560) - 158419..158982 (+) 564 WP_000166585.1 DNA-3-methyladenine glycosylase I -
  QMM27_RS00845 (Utah35B_01570) - 158979..159656 (+) 678 WP_000987422.1 type II CAAX endopeptidase family protein -
  QMM27_RS00850 (Utah35B_01580) - 159793..160824 (-) 1032 WP_000255096.1 S66 peptidase family protein -
  QMM27_RS00855 (Utah35B_01590) - 161079..161762 (-) 684 WP_000078022.1 DUF1129 domain-containing protein -
  QMM27_RS00860 (Utah35B_01600) - 161774..162718 (-) 945 WP_000815629.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21620.12 Da        Isoelectric Point: 6.7338

>NTDB_id=79124 QMM27_RS00835 WP_000271486.1 157816..158409(+) (ruvA) [Streptococcus pneumoniae strain Utah_35B-24]
MYAYLKGIITKITAKYIVLETNGIGYILHVANPYAYSGQVNQEAQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVAGDDLPAKIAVQASAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=79124 QMM27_RS00835 WP_000271486.1 157816..158409(+) (ruvA) [Streptococcus pneumoniae strain Utah_35B-24]
ATGTACGCATATTTAAAAGGAATCATTACCAAAATTACTGCCAAATACATTGTTCTTGAAACCAATGGTATTGGTTATAT
CCTGCATGTGGCCAATCCTTATGCCTATTCAGGTCAGGTTAATCAGGAGGCTCAGATTTATGTGCATCAGGTTGTGCGTG
AGGACGCCCATTTGCTTTATGGATTTCGCTCAGAGGATGAGAAAAAGCTCTTTCTTAGTCTGATTTCGGTCTCTGGGATT
GGTCCTGTATCAGCTCTTGCTATTATCGCTGCTGATGACAATGCTGGCTTGGTTCAAGCCATTGAAACCAAGAACATCAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTAGTTG
CAGGAGATGACCTTCCTGCCAAGATCGCAGTGCAAGCAAGTGCTGAAAACCAAGAATTGGAAGAAGCTATGGAAGCCATG
TTGGCTCTGGGCTACAAGGCAACAGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAGTCGGCCCTTAAAATGTTGGTCAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

99.492

100

0.995
  ruvA Streptococcus pneumoniae R6

98.985

100

0.99
  ruvA Streptococcus pneumoniae D39

98.985

100

0.99
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.291

100

0.421

Multiple sequence alignment