Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   PUW21_RS17325 Genome accession   NZ_CP118167
Coordinates   3285289..3285933 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain 21855     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3280289..3290933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW21_RS17290 (PUW21_17290) mrpB 3281481..3281912 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  PUW21_RS17295 (PUW21_17295) mrpC 3281912..3282253 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  PUW21_RS17300 (PUW21_17300) mrpD 3282246..3283727 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  PUW21_RS17305 (PUW21_17305) mrpE 3283733..3284209 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  PUW21_RS17310 (PUW21_17310) mrpF 3284209..3284493 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  PUW21_RS17315 (PUW21_17315) mnhG 3284477..3284851 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  PUW21_RS17320 (PUW21_17320) yuxO 3284890..3285270 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  PUW21_RS17325 (PUW21_17325) comA 3285289..3285933 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  PUW21_RS17330 (PUW21_17330) comP 3286014..3288323 (-) 2310 WP_015251333.1 two-component system sensor histidine kinase ComP Regulator
  PUW21_RS17335 (PUW21_17335) comX 3288338..3288505 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  PUW21_RS17340 (PUW21_17340) comQ 3288493..3289392 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  PUW21_RS17345 (PUW21_17345) degQ 3289577..3289717 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  PUW21_RS17350 (PUW21_17350) - 3289939..3290064 (+) 126 WP_003228793.1 hypothetical protein -
  PUW21_RS17355 (PUW21_17355) - 3290178..3290546 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=790996 PUW21_RS17325 WP_003220716.1 3285289..3285933(-) (comA) [Bacillus subtilis strain 21855]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=790996 PUW21_RS17325 WP_003220716.1 3285289..3285933(-) (comA) [Bacillus subtilis strain 21855]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1