Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   PTA87_RS04715 Genome accession   NZ_CP118163
Coordinates   971572..972201 (+) Length   209 a.a.
NCBI ID   WP_039644795.1    Uniprot ID   A0A0A8HRY9
Organism   Staphylococcus hyicus strain SG-7     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 966572..977201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTA87_RS04690 - 967266..968291 (-) 1026 WP_039644788.1 FUSC family protein -
  PTA87_RS04695 map 968585..969343 (+) 759 WP_107633460.1 type I methionyl aminopeptidase -
  PTA87_RS04700 - 969442..969828 (+) 387 WP_052257806.1 hypothetical protein -
  PTA87_RS04705 liaF 969841..970542 (+) 702 WP_107633459.1 cell wall-active antibiotics response protein LiaF -
  PTA87_RS04710 vraS 970539..971582 (+) 1044 WP_039644794.1 sensor histidine kinase Regulator
  PTA87_RS04715 vraR 971572..972201 (+) 630 WP_039644795.1 response regulator transcription factor Regulator
  PTA87_RS04720 - 972265..972834 (-) 570 WP_274316385.1 beta-class carbonic anhydrase -
  PTA87_RS04725 - 972869..974140 (-) 1272 WP_274316386.1 YihY/virulence factor BrkB family protein -
  PTA87_RS04730 - 974260..974535 (-) 276 WP_039644801.1 hypothetical protein -
  PTA87_RS04735 - 974542..975000 (-) 459 WP_039644802.1 low molecular weight protein-tyrosine-phosphatase -
  PTA87_RS04740 - 975133..975342 (+) 210 WP_039644804.1 DUF1128 family protein -
  PTA87_RS04745 - 975359..976594 (+) 1236 WP_274316387.1 aminopeptidase -
  PTA87_RS04750 - 976608..977126 (+) 519 WP_252538296.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23540.17 Da        Isoelectric Point: 5.1671

>NTDB_id=790863 PTA87_RS04715 WP_039644795.1 971572..972201(+) (vraR) [Staphylococcus hyicus strain SG-7]
MTIKVLFVDDHEMVRIGISSYLSTQPDIEVVGEGASGKEAITKAHELQPDLILMDLVMTDMDGVEATTQIKKDLPRIKVV
MLTSYIEDKEVYRALDAGVDSYILKTTSASDIAEAIRKTHKGESVFEAEVLVKMRNRMRQRAELYELLTEREMEILLLIS
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHGLIE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=790863 PTA87_RS04715 WP_039644795.1 971572..972201(+) (vraR) [Staphylococcus hyicus strain SG-7]
ATGACAATTAAAGTATTATTTGTGGATGATCATGAAATGGTAAGAATTGGAATATCAAGTTATCTTTCAACTCAACCTGA
TATTGAAGTAGTTGGTGAAGGAGCATCGGGTAAAGAAGCGATTACGAAGGCGCATGAACTTCAACCGGATTTGATTTTAA
TGGACTTAGTGATGACAGATATGGATGGTGTAGAAGCGACGACTCAAATTAAAAAAGATTTACCACGTATTAAAGTCGTG
ATGCTTACAAGCTATATTGAAGATAAAGAAGTTTACCGTGCGTTAGATGCAGGGGTGGACAGTTATATATTAAAAACAAC
AAGTGCAAGCGATATAGCCGAAGCAATTCGTAAAACACATAAAGGTGAATCTGTTTTTGAAGCTGAAGTGCTAGTGAAAA
TGCGAAATCGTATGAGACAAAGAGCAGAACTTTATGAATTATTAACGGAACGTGAAATGGAAATATTGTTACTGATTTCC
AAAGGTTACTCAAATCAGGAAATTGCGAGTGCCTCTCATATTACGATAAAGACGGTAAAAACGCATGTCAGTAACATTTT
AAGTAAGCTTGAAGTACAAGACCGTACACAAGCAGTTATTTATGCCTTTCAACATGGCTTAATTGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8HRY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

90.431

100

0.904
  degU Bacillus subtilis subsp. subtilis str. 168

35.714

100

0.383