Detailed information NTG0790761

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PUP50_RS28985
• Genome accession: NZ_CP118153
• Coordinates: 6342961..6343833 (+)
• Length: 290 a.a.
• NCBI ID: WP_274304664.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain ATCC 17811
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6337961..6348833

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP50_RS28970 (PUP50_28970)	-	6340318..6340674 (-)	357	WP_009045666.1	BON domain-containing protein	-
PUP50_RS28975 (PUP50_28975)	-	6340961..6341377 (-)	417	WP_007924673.1	pilin	-
PUP50_RS28980 (PUP50_28980)	pilC	6341741..6342958 (+)	1218	WP_274304663.1	type II secretion system F family protein	Machinery gene
PUP50_RS28985 (PUP50_28985)	pilD	6342961..6343833 (+)	873	WP_274304664.1	prepilin peptidase	Machinery gene
PUP50_RS28990 (PUP50_28990)	coaE	6343830..6344453 (+)	624	WP_009045669.1	dephospho-CoA kinase	-
PUP50_RS28995 (PUP50_28995)	yacG	6344450..6344653 (+)	204	WP_009045670.1	DNA gyrase inhibitor YacG	-
PUP50_RS29000 (PUP50_29000)	-	6344658..6344873 (-)	216	WP_053262705.1	hypothetical protein	-
PUP50_RS29005 (PUP50_29005)	-	6344939..6345628 (-)	690	WP_009045672.1	energy-coupling factor ABC transporter permease	-
PUP50_RS29010 (PUP50_29010)	-	6345625..6346092 (-)	468	WP_274304665.1	FAD/FMN-containing dehydrogenase	-
PUP50_RS29015 (PUP50_29015)	-	6346549..6347985 (+)	1437	WP_053262708.1	undecaprenyl-phosphate glucose phosphotransferase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32108.17 Da
• Isoelectric Point: 7.4002

>NTDB_id=790761 PUP50_RS28985 WP_274304664.1 6342961..6343833(+) (pilD) [Pseudomonas chlororaphis strain ATCC 17811]
MSLTEVLASYPLVFVASVLVLGLIVGSFLNVLIWRLPKMLERDWHAQARDILGLPDEPAGPTYNLLLPHSQCPHCAHPIR
PWENIPLLSYLLLRGRCSACQAPIGRRYPLVELTCGLASAFVAWHFGFGWQAGLMLFLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIVNGFDLFVSLHDALWGAVAGYLCLWSVYWLFKLLTGKEGMGHGDFKLLAMFGAWGGWQILPMTLLLASLTG
ALAGITMLRRNRAQMSTPIPFGPFLAIAGWIALLWGGQITDSYLQFVGFR

Nucleotide

• Length: 873 bp

>NTDB_id=790761 PUP50_RS28985 WP_274304664.1 6342961..6343833(+) (pilD) [Pseudomonas chlororaphis strain ATCC 17811]
ATGTCATTGACTGAGGTCCTGGCCAGCTACCCGCTGGTCTTCGTAGCATCGGTGCTGGTCCTGGGCCTGATTGTCGGCAG
CTTTCTCAATGTGCTGATCTGGCGGCTGCCAAAGATGCTCGAGCGCGACTGGCACGCCCAGGCCCGTGACATCCTCGGGC
TGCCCGACGAGCCTGCCGGGCCGACCTACAACCTGTTGCTCCCGCACTCCCAGTGCCCGCACTGCGCGCACCCGATCCGC
CCCTGGGAAAACATCCCGCTGCTCAGCTACCTGCTGCTGCGTGGACGCTGCTCCGCGTGCCAGGCCCCGATCGGCCGGCG
CTACCCGCTGGTGGAGCTGACCTGCGGCCTGGCCTCGGCGTTCGTGGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGGCT
TGATGCTGTTCCTGAGCTGGGGCCTGTTGGCGATGAGCCTGATCGATGCCGATCACCAACTGTTGCCCGACGTGCTGGTG
CTGCCCCTGTTGTGGCTGGGCCTGATCGTCAATGGCTTCGACCTGTTCGTCAGCCTCCACGATGCGCTGTGGGGCGCCGT
GGCCGGCTACCTGTGCCTGTGGTCGGTGTACTGGTTGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGGCACGGCGATT
TCAAGCTGTTGGCCATGTTCGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGCTGGCCTCACTGACGGGG
GCCCTGGCCGGGATCACCATGCTGCGCCGCAACCGCGCGCAAATGTCCACGCCTATCCCTTTCGGTCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTCCTATTTGCAGTTTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.846	98.621	0.531
pilD	Vibrio campbellii strain DS40M4	51.408	97.931	0.503
pilD	Acinetobacter baumannii D1279779	50.554	93.448	0.472
pilD	Acinetobacter nosocomialis M2	50.554	93.448	0.472
pilD	Neisseria gonorrhoeae MS11	48.529	93.793	0.455