Detailed information NTG0790706

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PUP54_RS25025
• Genome accession: NZ_CP118151
• Coordinates: 5510568..5511440 (+)
• Length: 290 a.a.
• NCBI ID: WP_053262704.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain ATCC 9446
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5505568..5516440

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP54_RS25010 (PUP54_25010)	-	5507925..5508281 (-)	357	WP_009045666.1	BON domain-containing protein	-
PUP54_RS25015 (PUP54_25015)	-	5508568..5508984 (-)	417	WP_007924673.1	pilin	-
PUP54_RS25020 (PUP54_25020)	pilC	5509348..5510565 (+)	1218	WP_053262703.1	type II secretion system F family protein	Machinery gene
PUP54_RS25025 (PUP54_25025)	pilD	5510568..5511440 (+)	873	WP_053262704.1	A24 family peptidase	Machinery gene
PUP54_RS25030 (PUP54_25030)	coaE	5511437..5512060 (+)	624	WP_009045669.1	dephospho-CoA kinase	-
PUP54_RS25035 (PUP54_25035)	yacG	5512057..5512260 (+)	204	WP_009045670.1	DNA gyrase inhibitor YacG	-
PUP54_RS25040 (PUP54_25040)	-	5512266..5512481 (-)	216	WP_053262705.1	hypothetical protein	-
PUP54_RS25045 (PUP54_25045)	-	5512547..5513236 (-)	690	WP_053262706.1	energy-coupling factor ABC transporter permease	-
PUP54_RS25050 (PUP54_25050)	-	5513233..5513700 (-)	468	WP_053262707.1	hypothetical protein	-
PUP54_RS25055 (PUP54_25055)	-	5514156..5515592 (+)	1437	WP_053262708.1	undecaprenyl-phosphate glucose phosphotransferase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32103.19 Da
• Isoelectric Point: 7.6850

>NTDB_id=790706 PUP54_RS25025 WP_053262704.1 5510568..5511440(+) (pilD) [Pseudomonas chlororaphis strain ATCC 9446]
MSLTEVLASYPLVFVASVLILGLIVGSFLNVLIWRLPKMLERDWHAQARDILGLPDEPAGPTYNLLLPHSQCPNCAHPIR
PWENIPLFSYLLLRGRCSACKAPIGRRYPLVELTCGLASAFVAWHFGFGWQAGLMLFLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIVNGFDLFVSLHDALWGAVAGYLCLWSVYWLFKLLTGKEGMGHGDFKLLAMFGAWGGWQILPMTLLLASLTG
ALAGIAMLRRNRAQMSTPIPFGPFLAIAGWIALLWGGQITDSYLQFVGFR

Nucleotide

• Length: 873 bp

>NTDB_id=790706 PUP54_RS25025 WP_053262704.1 5510568..5511440(+) (pilD) [Pseudomonas chlororaphis strain ATCC 9446]
ATGTCATTGACTGAGGTCCTGGCCAGCTACCCGCTGGTCTTCGTAGCATCGGTGCTGATCCTGGGCCTGATTGTCGGCAG
CTTTCTCAATGTGCTGATCTGGCGTCTGCCAAAGATGCTCGAACGCGACTGGCACGCCCAGGCCCGTGACATCCTCGGGC
TGCCCGACGAGCCTGCCGGGCCGACCTACAACCTGTTGCTCCCGCACTCCCAGTGCCCGAACTGTGCGCACCCGATCCGC
CCCTGGGAAAACATCCCGCTGTTCAGCTACCTGCTGCTGCGCGGACGCTGCTCCGCGTGCAAGGCCCCGATCGGCCGGCG
CTACCCGCTGGTGGAGCTGACCTGCGGCCTGGCCTCGGCGTTCGTGGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGGCT
TGATGCTGTTCCTGAGCTGGGGCCTGTTGGCGATGAGCCTGATCGATGCCGATCATCAACTGTTGCCCGACGTGCTGGTG
CTGCCCCTGTTGTGGCTGGGCTTGATCGTCAATGGCTTCGACCTGTTCGTCAGCCTCCACGATGCGCTGTGGGGCGCCGT
GGCCGGCTACCTGTGCCTGTGGTCGGTGTACTGGTTGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGGCACGGCGATT
TCAAGCTGTTGGCCATGTTCGGCGCCTGGGGCGGTTGGCAGATTCTGCCGATGACCCTGCTGCTGGCCTCACTGACCGGA
GCCCTGGCCGGGATCGCCATGCTGCGCCGCAACCGCGCGCAAATGTCCACGCCTATCCCTTTCGGTCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTCCTATTTGCAGTTTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.497	98.621	0.528
pilD	Vibrio campbellii strain DS40M4	51.408	97.931	0.503
pilD	Acinetobacter baumannii D1279779	50.185	93.448	0.469
pilD	Acinetobacter nosocomialis M2	50.185	93.448	0.469
pilD	Neisseria gonorrhoeae MS11	47.794	93.793	0.448