Detailed information NTG0790683

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PUP49_RS28360
• Genome accession: NZ_CP118150
• Coordinates: 6292061..6292933 (+)
• Length: 290 a.a.
• NCBI ID: WP_025807493.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain DSM 21509
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6287061..6297933

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP49_RS28345 (PUP49_28345)	-	6289413..6289769 (-)	357	WP_053280958.1	BON domain-containing protein	-
PUP49_RS28350 (PUP49_28350)	-	6290059..6290475 (-)	417	WP_053280959.1	pilin	-
PUP49_RS28355 (PUP49_28355)	pilC	6290841..6292058 (+)	1218	WP_053280960.1	type II secretion system F family protein	Machinery gene
PUP49_RS28360 (PUP49_28360)	pilD	6292061..6292933 (+)	873	WP_025807493.1	prepilin peptidase	Machinery gene
PUP49_RS28365 (PUP49_28365)	coaE	6292930..6293553 (+)	624	WP_053280961.1	dephospho-CoA kinase	-
PUP49_RS28370 (PUP49_28370)	yacG	6293550..6293753 (+)	204	WP_025807495.1	DNA gyrase inhibitor YacG	-
PUP49_RS28375 (PUP49_28375)	-	6293758..6293973 (-)	216	WP_053280962.1	hypothetical protein	-
PUP49_RS28380 (PUP49_28380)	-	6294039..6294728 (-)	690	WP_025807497.1	energy-coupling factor ABC transporter permease	-
PUP49_RS28385 (PUP49_28385)	-	6294725..6295192 (-)	468	WP_053280963.1	hypothetical protein	-
PUP49_RS28390 (PUP49_28390)	-	6295648..6297084 (+)	1437	WP_053280964.1	undecaprenyl-phosphate glucose phosphotransferase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32014.10 Da
• Isoelectric Point: 8.2548

>NTDB_id=790683 PUP49_RS28360 WP_025807493.1 6292061..6292933(+) (pilD) [Pseudomonas chlororaphis strain DSM 21509]
MSLTEVLASYPLVFVASVLVLGLIVGSFLNVLIWRLPKMLERDWHAQARDILGLPVEPAGPTYNLLLPHSQCPHCAHPIR
PWENIPVFSYLLLRGRCSACKTPIGRRYPLVELTCGLASAFVAWHFGFGWQAGLMLFLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIVNGFDLFVSLHDALWGAVAGYLCLWSVYWSFKLLTGKEGMGHGDFKLLAMFGAWGGWQILPMTLLLASLTG
ALAGVAMLRRNRAQMSTPIPFGPFLAIAGWIALLWGGQITGSYLQFVGFR

Nucleotide

• Length: 873 bp

>NTDB_id=790683 PUP49_RS28360 WP_025807493.1 6292061..6292933(+) (pilD) [Pseudomonas chlororaphis strain DSM 21509]
ATGTCATTGACTGAGGTCCTGGCCAGCTACCCGCTGGTCTTCGTAGCATCGGTGCTGGTCCTGGGCCTGATTGTCGGCAG
CTTCCTCAACGTGCTGATCTGGCGGCTGCCAAAGATGCTCGAGCGCGACTGGCATGCCCAGGCCCGGGACATCCTGGGGC
TGCCCGTGGAACCTGCCGGGCCGACCTACAACCTGTTGCTCCCACACTCCCAGTGCCCTCACTGCGCGCACCCGATCCGC
CCCTGGGAAAACATCCCAGTGTTCAGCTACCTGCTGCTGCGCGGACGCTGCTCGGCGTGCAAGACCCCGATCGGCCGGCG
CTACCCGCTGGTGGAGCTGACCTGCGGCCTGGCCTCGGCGTTCGTGGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGGCT
TGATGCTGTTCCTGAGCTGGGGCCTGTTGGCGATGAGCCTGATCGATGCCGATCATCAACTGTTGCCCGACGTGCTGGTG
CTGCCTCTGTTGTGGCTGGGCCTGATCGTCAATGGTTTCGACCTGTTCGTCAGCCTCCACGATGCGCTGTGGGGCGCCGT
GGCCGGCTACCTGTGCCTGTGGTCGGTGTACTGGTCGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGGCACGGCGATT
TCAAGCTGTTGGCCATGTTCGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGCTGGCCTCACTGACGGGG
GCCCTGGCCGGGGTCGCCATGCTGCGCCGCAACCGCGCGCAAATGTCCACGCCTATCCCTTTTGGTCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTCCTATTTGCAGTTTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.004	97.586	0.517
pilD	Vibrio campbellii strain DS40M4	51.064	97.241	0.497
pilD	Acinetobacter baumannii D1279779	49.815	93.448	0.466
pilD	Acinetobacter nosocomialis M2	49.077	93.448	0.459
pilD	Neisseria gonorrhoeae MS11	48.162	93.793	0.452