Detailed information NTG0790583

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PUP66_RS26610
• Genome accession: NZ_CP118146
• Coordinates: 5910808..5911680 (+)
• Length: 290 a.a.
• NCBI ID: WP_114761471.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain ATCC 174152
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5905808..5916680

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP66_RS26595 (PUP66_26595)	-	5908165..5908521 (-)	357	WP_009045666.1	BON domain-containing protein	-
PUP66_RS26600 (PUP66_26600)	-	5908807..5909223 (-)	417	WP_007924673.1	pilin	-
PUP66_RS26605 (PUP66_26605)	pilC	5909588..5910805 (+)	1218	WP_114761470.1	type II secretion system F family protein	Machinery gene
PUP66_RS26610 (PUP66_26610)	pilD	5910808..5911680 (+)	873	WP_114761471.1	prepilin peptidase	Machinery gene
PUP66_RS26615 (PUP66_26615)	coaE	5911677..5912300 (+)	624	WP_009045669.1	dephospho-CoA kinase	-
PUP66_RS26620 (PUP66_26620)	yacG	5912297..5912500 (+)	204	WP_009045670.1	DNA gyrase inhibitor YacG	-
PUP66_RS26625 (PUP66_26625)	-	5912505..5912720 (-)	216	WP_007924682.1	hypothetical protein	-
PUP66_RS26630 (PUP66_26630)	-	5912786..5913475 (-)	690	WP_114761472.1	energy-coupling factor ABC transporter permease	-
PUP66_RS26635 (PUP66_26635)	-	5913472..5913939 (-)	468	WP_053262707.1	hypothetical protein	-
PUP66_RS26640 (PUP66_26640)	-	5914393..5915829 (+)	1437	WP_114761473.1	undecaprenyl-phosphate glucose phosphotransferase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32106.20 Da
• Isoelectric Point: 7.4003

>NTDB_id=790583 PUP66_RS26610 WP_114761471.1 5910808..5911680(+) (pilD) [Pseudomonas chlororaphis strain ATCC 174152]
MSLTEVLASYPLVFVASVLVLGLIVGSFLNVLIWRLPKMLERDWHAQARDILGLPDEPVGPTYNLLLPHSQCPHCAHPIR
PWENIPLFSYLLLRGRCSACQAPIGRRYPLVELTCGLASAFVAWHFGFGWQAGLMLLLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIVNGFELFVSLHDALWGAVAGYLCLWSVYWLFKLLTGKEGMGHGDFKLLAMFGAWGGWQILPMTLLLASLTG
ALAGVAMLRRNRAQMSTPIPFGPFLAIAGWIALLWGGQITDSYLQFVGFR

Nucleotide

• Length: 873 bp

>NTDB_id=790583 PUP66_RS26610 WP_114761471.1 5910808..5911680(+) (pilD) [Pseudomonas chlororaphis strain ATCC 174152]
ATGTCATTGACTGAGGTCCTGGCCAGCTATCCGCTGGTCTTCGTAGCATCGGTGCTGGTCCTGGGCCTGATTGTCGGCAG
CTTTCTCAATGTGCTGATCTGGCGGCTGCCAAAGATGCTCGAGCGCGACTGGCACGCCCAGGCCCGTGACATCCTCGGGC
TGCCCGACGAGCCTGTCGGGCCGACCTATAACCTGTTGCTCCCACACTCCCAGTGCCCGCACTGTGCGCACCCGATCCGC
CCCTGGGAAAACATCCCGCTGTTCAGCTACCTGCTGCTGCGCGGACGCTGCTCCGCGTGCCAGGCCCCGATCGGCCGGCG
CTACCCGCTGGTGGAGCTGACCTGCGGCCTGGCCTCGGCGTTCGTGGCCTGGCATTTCGGCTTCGGCTGGCAGGCCGGCC
TGATGCTGCTCCTGAGCTGGGGCCTGTTGGCGATGAGCCTGATCGACGCCGATCATCAACTGTTGCCCGACGTGCTGGTG
CTGCCCCTGTTGTGGCTGGGCCTGATCGTCAATGGCTTCGAGCTGTTCGTCAGCCTCCACGATGCGCTGTGGGGCGCCGT
GGCCGGCTACCTGTGCCTGTGGTCGGTGTACTGGTTGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGGCACGGCGATT
TCAAGCTGTTGGCCATGTTCGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGCTGGCCTCACTGACGGGA
GCCCTGGCCGGAGTCGCCATGCTGCGCCGCAACCGCGCGCAAATGTCCACGCCTATCCCTTTCGGTCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTCCTATTTGCAGTTTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.147	98.621	0.524
pilD	Vibrio campbellii strain DS40M4	51.579	98.276	0.507
pilD	Acinetobacter baumannii D1279779	50.185	93.448	0.469
pilD	Acinetobacter nosocomialis M2	50.185	93.448	0.469
pilD	Neisseria gonorrhoeae MS11	48.162	93.793	0.452