Detailed information NTG0790505

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PUP62_RS27765
• Genome accession: NZ_CP118143
• Coordinates: 6148495..6149367 (+)
• Length: 290 a.a.
• NCBI ID: WP_274330488.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain ATCC 174182
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6143495..6154367

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUP62_RS27750 (PUP62_27750)	-	6145853..6146209 (-)	357	WP_009045666.1	BON domain-containing protein	-
PUP62_RS27755 (PUP62_27755)	-	6146495..6146911 (-)	417	WP_007924673.1	pilin	-
PUP62_RS27760 (PUP62_27760)	pilC	6147275..6148492 (+)	1218	WP_123573554.1	type II secretion system F family protein	Machinery gene
PUP62_RS27765 (PUP62_27765)	pilD	6148495..6149367 (+)	873	WP_274330488.1	prepilin peptidase	Machinery gene
PUP62_RS27770 (PUP62_27770)	coaE	6149364..6149987 (+)	624	WP_009045669.1	dephospho-CoA kinase	-
PUP62_RS27775 (PUP62_27775)	yacG	6149984..6150187 (+)	204	WP_009045670.1	DNA gyrase inhibitor YacG	-
PUP62_RS27780 (PUP62_27780)	-	6150192..6150407 (-)	216	WP_009045671.1	hypothetical protein	-
PUP62_RS27785 (PUP62_27785)	-	6150473..6151162 (-)	690	WP_009045672.1	energy-coupling factor ABC transporter permease	-
PUP62_RS27790 (PUP62_27790)	-	6151159..6151626 (-)	468	WP_123412471.1	FAD/FMN-containing dehydrogenase	-
PUP62_RS27795 (PUP62_27795)	-	6152081..6153517 (+)	1437	WP_009045674.1	undecaprenyl-phosphate glucose phosphotransferase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32122.24 Da
• Isoelectric Point: 7.4003

>NTDB_id=790505 PUP62_RS27765 WP_274330488.1 6148495..6149367(+) (pilD) [Pseudomonas chlororaphis strain ATCC 174182]
MSLTEVLASYPLVFVASVLVLGLIVGSFLNVLIWRLPKMLERDWHAQARDILGLPDEPVGPTYNLLLPHSQCPHCAHPIR
IWENIPLFSYLLLRGRCSACQAPIGRRYPLVELTCGLASAFVAWHFGFGWQAGLMLLLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIVNGFELFVSLHDALWGAVAGYLCLWSVYWLFKLLTGKEGMGHGDFKLLAMFGAWGGWQILPMTLLLASLTG
ALAGVAMLRRNRAQMSTPIPFGPFLAIAGWIALLWGGQITDSYLQFVGFR

Nucleotide

• Length: 873 bp

>NTDB_id=790505 PUP62_RS27765 WP_274330488.1 6148495..6149367(+) (pilD) [Pseudomonas chlororaphis strain ATCC 174182]
ATGTCATTGACTGAGGTCCTGGCCAGCTACCCGCTGGTCTTCGTAGCATCGGTGCTGGTCCTGGGCCTGATTGTCGGCAG
CTTTCTCAATGTGCTGATCTGGCGGCTGCCAAAGATGCTCGAGCGCGACTGGCACGCCCAGGCCCGTGACATCCTCGGGC
TGCCCGACGAGCCTGTCGGGCCGACCTATAACCTGTTGCTCCCACACTCCCAGTGCCCGCACTGTGCGCACCCGATCCGC
ATCTGGGAAAACATCCCGCTGTTCAGCTACCTGCTGCTGCGCGGACGCTGCTCCGCATGCCAGGCCCCGATCGGCCGGCG
CTACCCGCTGGTGGAGCTGACCTGCGGCCTGGCCTCGGCGTTCGTGGCCTGGCATTTCGGCTTCGGCTGGCAGGCCGGCC
TGATGCTGCTCCTGAGCTGGGGCCTGTTGGCGATGAGCCTGATCGACGCCGATCATCAACTGTTGCCCGACGTGCTGGTG
CTGCCCCTGTTGTGGCTGGGCCTGATCGTCAATGGCTTCGAGCTGTTCGTCAGCCTCCACGATGCGCTGTGGGGCGCCGT
GGCCGGCTACCTGTGCCTGTGGTCGGTGTACTGGTTGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGGCACGGCGATT
TCAAGCTGTTGGCCATGTTCGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGCTGGCCTCACTGACGGGA
GCCCTGGCCGGAGTCGCCATGCTGCGCCGCAACCGCGCGCAAATGTCCACGCCTATCCCTTTCGGTCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTCCTATTTGCAGTTTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.147	98.621	0.524
pilD	Vibrio campbellii strain DS40M4	51.93	98.276	0.51
pilD	Acinetobacter baumannii D1279779	50.185	93.448	0.469
pilD	Acinetobacter nosocomialis M2	50.185	93.448	0.469
pilD	Neisseria gonorrhoeae MS11	48.162	93.793	0.452