Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PUP72_RS17190 Genome accession   NZ_CP118134
Coordinates   3836718..3838943 (-) Length   741 a.a.
NCBI ID   WP_274354882.1    Uniprot ID   -
Organism   Pseudomonas synxantha strain ATCC 17413     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3831718..3843943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUP72_RS17155 (PUP72_17155) murB 3832087..3833106 (-) 1020 WP_046068610.1 UDP-N-acetylmuramate dehydrogenase -
  PUP72_RS17160 (PUP72_17160) - 3833103..3833567 (-) 465 WP_059397952.1 low molecular weight protein-tyrosine-phosphatase -
  PUP72_RS17165 (PUP72_17165) kdsB 3833567..3834331 (-) 765 WP_046068612.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PUP72_RS17170 (PUP72_17170) - 3834328..3834513 (-) 186 WP_003174668.1 Trm112 family protein -
  PUP72_RS17175 (PUP72_17175) lpxK 3834538..3835548 (-) 1011 WP_274354881.1 tetraacyldisaccharide 4'-kinase -
  PUP72_RS17180 (PUP72_17180) - 3835548..3835976 (-) 429 WP_043046643.1 ExbD/TolR family protein -
  PUP72_RS17185 (PUP72_17185) exbB 3835973..3836608 (-) 636 WP_046068614.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PUP72_RS17190 (PUP72_17190) comA 3836718..3838943 (-) 2226 WP_274354882.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PUP72_RS17195 (PUP72_17195) - 3839079..3839594 (+) 516 WP_056846549.1 DUF2062 domain-containing protein -
  PUP72_RS17200 (PUP72_17200) - 3839599..3840957 (-) 1359 WP_274354883.1 sensor histidine kinase -
  PUP72_RS17205 (PUP72_17205) - 3840944..3841672 (-) 729 WP_274354884.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80296.22 Da        Isoelectric Point: 10.6575

>NTDB_id=790266 PUP72_RS17190 WP_274354882.1 3836718..3838943(-) (comA) [Pseudomonas synxantha strain ATCC 17413]
MKTAMLALALGLLALRWLPALPSGAGVLGMLVLVLMLLPFRTYPVAFFLLGLSWACISAQWALDDRLRPVLDGQTRWVEG
RVIGLPQQTGTSVRFELADSRSRTARLPKRIRVSWHGGPTVNSGERWRLALTLKRPAGLLNFHGFDHEAWLLAQRIGATA
TVKDGERLAPARNAWRDAVRQRLLAVDAQGREAGLAALVLGDGSGLAPEDWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
IALLARHGCWPRTWSWLPWACGLAFSGALAYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLALNAVLALEPL
ASLQPGFWLSFAAVAALVLAFSGRLGPWSAWQVWTRPQWLIAIGLFPLLLVLGLPISLSAPVANLVAVPWISLVVLPLAL
LGTALLWVPLAGDALLWLAGGALDGLFKGLALLAVRLPAWIPAEVPLGYWLVSLAGAVILLLPKGLPFRLLGWPMLLLAV
FPPRESIPHGQVDVVQLDVGQGQALILRTRHHSLLYDAGPRSGPVDQGARVVLPSLKKLGVGQLDMMLLSHADADHAGGA
EAVARGLPVKRVVGGETEGLPGFLGTQACTRGERWEWDGVAFELWQWAGAIDGNPRSCVLQVEANGERLLLTGDIDRAAE
QAFLASPLAVPTDWLQAPHHGSRSSSSWPFLQRLAPASVLISRGRSNAFGHPHPQVMERYQALGSRVYDSAEQGAVRLRL
GTFLPPTVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=790266 PUP72_RS17190 WP_274354882.1 3836718..3838943(-) (comA) [Pseudomonas synxantha strain ATCC 17413]
ATGAAAACAGCGATGTTGGCCTTGGCGCTGGGGCTACTGGCGTTGCGTTGGTTACCTGCGTTGCCGTCTGGCGCAGGGGT
GTTGGGCATGTTGGTGCTGGTGTTGATGCTGCTGCCTTTTCGCACCTATCCCGTGGCGTTCTTCCTGTTGGGTTTGAGTT
GGGCCTGTATCAGTGCGCAGTGGGCGCTGGATGACCGCTTGCGGCCGGTGCTGGATGGGCAGACGCGCTGGGTCGAAGGG
CGTGTCATCGGCCTGCCGCAACAGACGGGCACAAGCGTGCGCTTCGAACTGGCCGACAGCCGGTCGCGCACTGCGCGGCT
GCCCAAGCGCATCCGCGTGTCCTGGCATGGCGGGCCGACGGTTAACAGTGGGGAGCGCTGGCGCCTGGCATTGACGCTAA
AGCGGCCTGCCGGCCTGCTTAATTTCCACGGGTTTGACCATGAGGCCTGGTTGCTGGCCCAGCGTATCGGCGCCACCGCG
ACGGTAAAGGACGGCGAGCGCCTGGCGCCGGCCCGCAATGCCTGGCGCGATGCTGTCCGCCAGCGCCTGCTGGCCGTGGA
TGCCCAGGGCCGCGAGGCGGGCTTGGCTGCATTGGTACTGGGCGACGGTTCCGGGCTGGCGCCTGAGGATTGGCAGGTGT
TGCAGGACACCGGCACGGTGCATCTGCTGGTGATTTCCGGGCAGCACATTGGCTTGCTGGCGGGGTTGATCTACGGCTTG
ATCGCTTTGTTGGCGCGCCATGGGTGCTGGCCCCGAACCTGGTCGTGGCTGCCGTGGGCGTGCGGCTTGGCATTTTCCGG
GGCGTTGGCTTATGGCCTGCTGGCGGGGTTCGGCGTGCCGGTGCAGCGGGCTTGCGTCATGGTGGGCCTGGTATTGCTGT
GGCGTTTGCGCTTTCGTCACTTGGGTGTTTGGTGGCCGTTGTTGCTGGCGCTGAACGCTGTGCTGGCGCTTGAGCCCCTG
GCCAGCCTGCAACCGGGGTTCTGGCTGTCGTTTGCGGCGGTCGCAGCGCTGGTCCTGGCGTTCAGCGGGCGCCTGGGGCC
GTGGAGCGCCTGGCAGGTCTGGACGCGTCCCCAGTGGTTGATCGCCATTGGCTTGTTCCCGTTGTTGCTGGTATTGGGTT
TGCCCATCAGCCTCAGTGCACCCGTGGCCAACCTGGTTGCGGTGCCGTGGATCAGCCTGGTGGTGCTGCCCTTGGCGCTG
CTGGGCACGGCGCTGCTGTGGGTGCCGTTGGCCGGTGACGCTTTGCTGTGGTTGGCGGGTGGCGCGCTGGACGGCTTGTT
CAAGGGCCTGGCGCTGCTTGCTGTGCGACTGCCTGCCTGGATACCGGCCGAAGTACCTTTGGGCTATTGGCTGGTGAGTC
TGGCCGGCGCAGTAATTTTGCTATTGCCCAAGGGGCTGCCGTTTCGGTTATTGGGCTGGCCCATGCTGTTGTTGGCGGTT
TTTCCACCCAGGGAGTCGATACCCCATGGGCAGGTTGACGTGGTGCAGCTGGATGTCGGCCAGGGGCAGGCCCTGATCCT
GCGCACTCGCCATCACTCCTTGCTTTATGACGCCGGGCCCCGGTCGGGGCCTGTCGACCAGGGGGCGCGGGTCGTCTTGC
CGTCGTTGAAAAAGCTGGGGGTAGGGCAGTTGGACATGATGCTGCTCAGCCATGCTGATGCCGATCATGCCGGCGGTGCG
GAGGCAGTGGCGCGGGGGCTGCCCGTCAAGCGCGTGGTGGGCGGCGAAACCGAAGGCCTGCCGGGGTTTCTCGGTACCCA
GGCCTGTACCCGTGGCGAGCGTTGGGAATGGGATGGCGTGGCCTTTGAGCTGTGGCAATGGGCCGGTGCGATTGATGGCA
ATCCGAGGTCCTGCGTACTGCAGGTCGAGGCCAATGGCGAACGCCTGCTGCTCACCGGCGATATTGATCGCGCCGCCGAA
CAGGCATTCCTTGCCTCGCCGCTGGCGGTGCCGACCGATTGGCTGCAGGCCCCGCACCATGGCAGCCGCAGCTCTTCGTC
CTGGCCCTTCCTGCAGCGGCTGGCGCCGGCATCGGTGCTGATCTCCCGTGGGCGCAGCAATGCATTCGGCCATCCTCATC
CACAAGTAATGGAGCGCTATCAGGCCCTGGGCAGTCGGGTATATGACAGCGCTGAACAAGGCGCAGTGCGCCTGCGCCTG
GGAACGTTCCTTCCACCGACTGTTGCGCGCAGTCAACGCAGGTTCTGGCGCGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-664)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.11

97.031

0.574
  comA Ralstonia pseudosolanacearum GMI1000

35.346

100

0.379