Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PUP72_RS17185 Genome accession   NZ_CP118134
Coordinates   3835973..3836608 (-) Length   211 a.a.
NCBI ID   WP_046068614.1    Uniprot ID   A0A0R3ANC2
Organism   Pseudomonas synxantha strain ATCC 17413     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3830973..3841608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUP72_RS17150 (PUP72_17150) - 3831341..3832012 (+) 672 WP_046068609.1 Bax inhibitor-1/YccA family protein -
  PUP72_RS17155 (PUP72_17155) murB 3832087..3833106 (-) 1020 WP_046068610.1 UDP-N-acetylmuramate dehydrogenase -
  PUP72_RS17160 (PUP72_17160) - 3833103..3833567 (-) 465 WP_059397952.1 low molecular weight protein-tyrosine-phosphatase -
  PUP72_RS17165 (PUP72_17165) kdsB 3833567..3834331 (-) 765 WP_046068612.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PUP72_RS17170 (PUP72_17170) - 3834328..3834513 (-) 186 WP_003174668.1 Trm112 family protein -
  PUP72_RS17175 (PUP72_17175) lpxK 3834538..3835548 (-) 1011 WP_274354881.1 tetraacyldisaccharide 4'-kinase -
  PUP72_RS17180 (PUP72_17180) - 3835548..3835976 (-) 429 WP_043046643.1 ExbD/TolR family protein -
  PUP72_RS17185 (PUP72_17185) exbB 3835973..3836608 (-) 636 WP_046068614.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PUP72_RS17190 (PUP72_17190) comA 3836718..3838943 (-) 2226 WP_274354882.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PUP72_RS17195 (PUP72_17195) - 3839079..3839594 (+) 516 WP_056846549.1 DUF2062 domain-containing protein -
  PUP72_RS17200 (PUP72_17200) - 3839599..3840957 (-) 1359 WP_274354883.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22850.05 Da        Isoelectric Point: 7.3615

>NTDB_id=790265 PUP72_RS17185 WP_046068614.1 3835973..3836608(-) (exbB) [Pseudomonas synxantha strain ATCC 17413]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGAGMATNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=790265 PUP72_RS17185 WP_046068614.1 3835973..3836608(-) (exbB) [Pseudomonas synxantha strain ATCC 17413]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCCGCACTCGGCATCGTTGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCACCTGCTGGGGCAAGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGCAAAAACTCAAGGAACTGCGCGCCAATTCGCCGCTGGGTGAAATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAAGAGTGCATTGAAGAAGCGGCTGCGCGGGTAATCCATGAGCTGGAGCGTTACAT
CAACGCTCTCGGTACCATCGCCGCCATGGCACCGCTGCTTGGCCTGCTCGGCACGGTGCTGGGCATGATCGACATTTTCA
GCTCATTCATGGGCGCGGGCATGGCGACCAATGCGGCGGTACTTGCCGGCGGTATTTCCAAGGCCTTGATCACCACGGCT
GCGGGCCTGATGGTGGGGATTCCCGCGGTGTTCTTTCACCGCTTCCTGCAACGGCGCATCGATGAGCTGGTGGTCGGCAT
GGAACAGGAAGCTATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGACGTGGACTTGGTCGAGGGTAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R3ANC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867