Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   Q7642_RS03950 Genome accession   NZ_CP131652
Coordinates   829808..831793 (+) Length   661 a.a.
NCBI ID   WP_000229246.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2008S01-206     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 824808..836793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7642_RS03930 (Q7642_03920) - 826313..827152 (+) 840 WP_000749393.1 CHAP domain-containing protein -
  Q7642_RS03935 (Q7642_03925) - 827326..827976 (+) 651 WP_000538142.1 YfbR-like 5'-deoxynucleotidase -
  Q7642_RS03940 (Q7642_03930) - 827973..828209 (+) 237 WP_000638419.1 CsbA family protein -
  Q7642_RS03945 (Q7642_03935) - 828306..829476 (+) 1171 Protein_765 IS256-like element IS256 family transposase -
  Q7642_RS03950 (Q7642_03940) uvrB 829808..831793 (+) 1986 WP_000229246.1 excinuclease ABC subunit UvrB Machinery gene
  Q7642_RS03955 (Q7642_03945) uvrA 831801..834629 (+) 2829 WP_031875189.1 excinuclease ABC subunit UvrA Machinery gene
  Q7642_RS03960 (Q7642_03950) hprK 835006..835938 (+) 933 WP_000958226.1 HPr(Ser) kinase/phosphatase -
  Q7642_RS03965 (Q7642_03955) lgt 835944..836783 (+) 840 WP_000513311.1 prolipoprotein diacylglyceryl transferase -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 76693.40 Da        Isoelectric Point: 5.0121

>NTDB_id=790110 Q7642_RS03950 WP_000229246.1 829808..831793(+) (uvrB) [Staphylococcus aureus strain 2008S01-206]
MVEHYPFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFK
EFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLV
VSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRIEFFGDEIDRIREVNYLTGEVLKER
EHFAIFPASHFVTREEKMKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPL
GSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGP
YEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRIERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSE
IKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDRGEVIMYADKMTD
SMKYAIDETQRRREIQMKHNEVHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAK
DLDFEKATELRDMLFELKAEG

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=790110 Q7642_RS03950 WP_000229246.1 829808..831793(+) (uvrB) [Staphylococcus aureus strain 2008S01-206]
ATGGTTGAACATTATCCTTTTAAAATACATTCTGATTTTGAGCCTCAAGGGGACCAACCGCAAGCAATTAAGGAAATCGT
GGAAGGTATTAAAGCGGGGAAAAGACATCAAACTTTATTAGGTGCAACTGGCACAGGGAAAACATTTACGATGAGTAATG
TTATTAAAGAAGTTGGGAAACCAACGTTAATTATCGCGCATAACAAAACATTAGCAGGACAATTATATAGTGAGTTTAAA
GAATTTTTTCCTGAAAACAGGGTGGAATACTTTGTAAGTTACTATGATTATTATCAACCTGAGGCATACGTACCGTCTAC
TGACACTTTTATTGAAAAAGATGCCTCAATCAATGATGAAATTGATCAACTACGACATTCTGCTACAAGTGCATTATTTG
AACGCGATGATGTAATTATTATTGCTAGTGTAAGTTGTATATATGGTTTAGGTAATCCAGAAGAATATAAAGATTTAGTA
GTAAGTGTTCGAGTTGGTATGGAAATGGATAGAAGTGAATTACTTAGAAAACTTGTAGATGTGCAATATACACGAAATGA
CATCGATTTCCAACGAGGAACGTTTCGAGTGCGTGGAGACGTCGTTGAAATATTCCCAGCCTCTAAGGAAGAACTATGTA
TACGAATTGAGTTTTTTGGTGACGAAATCGATCGTATCCGAGAAGTTAATTATTTAACAGGTGAAGTGTTGAAAGAAAGG
GAACATTTTGCAATCTTCCCTGCATCTCACTTCGTCACACGTGAAGAAAAGATGAAAGTTGCGATTGAACGTATTGAAAA
AGAATTGGAAGAACGATTGAAAGAATTACGAGATGAGAATAAATTACTAGAAGCGCAAAGGTTAGAACAGCGTACCAATT
ATGATTTAGAAATGATGCGTGAGATGGGGTTCTGTTCAGGAATTGAAAACTATTCTGTACATTTAACTTTGCGACCACTG
GGTTCGACACCATATACTTTATTGGATTACTTTGGCGATGATTGGTTAGTAATGATTGATGAATCACATGTGACATTACC
GCAAGTTCGAGGCATGTATAACGGAGACAGAGCGCGTAAACAAGTTTTGGTGGATCATGGATTTAGATTACCGAGTGCGT
TAGATAACCGCCCACTTAAATTTGAAGAATTTGAAGAAAAGACAAAACAACTTGTTTATGTATCTGCAACGCCTGGTCCA
TACGAAATTGAACATACGGATAAGATGGTTGAACAAATTATTCGTCCTACTGGTTTACTGGATCCTAAGATTGAGGTTAG
ACCTACTGAAAATCAAATTGACGATTTATTAAGTGAAATACAAACAAGGATTGAGCGTAATGAACGCGTACTTGTTACAA
CACTCACTAAAAAGATGAGCGAAGATTTAACCACATACATGAAAGAAGCAGGCATTAAAGTTAATTATCTGCATTCAGAA
ATCAAGACATTAGAACGAATTGAAATTATAAGAGATTTACGTATGGGTACGTATGATGTCATTGTAGGGATTAATTTATT
AAGAGAGGGTATTGATATTCCAGAAGTGTCTTTAGTTGTGATATTAGATGCAGATAAAGAAGGATTTTTACGTTCAAATC
GTTCATTAATACAAACAATAGGTAGAGCCGCACGTAATGATCGAGGCGAAGTGATTATGTATGCTGATAAAATGACTGAT
TCAATGAAGTATGCTATTGATGAAACGCAACGTCGTCGAGAAATTCAAATGAAACACAATGAAGTACATGGTATAACACC
TAAAACAATCAACAAGAAAATACATGATCTTATAAGTGCTACTGTTGAAAATGACGAAAATAATGACAAAGCACAAACTG
TGATACCTAAGAAGATGACGAAAAAAGAACGTCAAAAGACAATCGACAATATAGAAAAAGAAATGAAACAAGCAGCGAAA
GATTTAGATTTCGAGAAAGCTACAGAATTAAGAGATATGTTATTTGAATTAAAAGCAGAAGGGTGA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(553-594)

Type III restriction enzyme, res subunit (ResIII)

(14-140)

UvrB interaction domain (UvrB_inter)

(161-251)

Helicase conserved C-terminal domain (Helicase_C)

(435-546)

UvrB/uvrC motif (UVR)

(626-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

67.381

98.79

0.666
  uvrB Streptococcus pneumoniae D39

67.381

98.79

0.666
  uvrB Streptococcus pneumoniae TIGR4

67.381

98.79

0.666