Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   Q7644_RS02960 Genome accession   NZ_CP131645
Coordinates   555436..557463 (+) Length   675 a.a.
NCBI ID   WP_047917651.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2004S05-027     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 550436..562463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7644_RS02945 (Q7644_02965) - 550821..551381 (-) 561 WP_003691340.1 CreA family protein -
  Q7644_RS02950 (Q7644_02970) - 551708..553504 (+) 1797 WP_341931130.1 peptidoglycan DD-metalloendopeptidase family protein -
  Q7644_RS02955 (Q7644_02975) - 553631..555106 (+) 1476 WP_003691337.1 S41 family peptidase -
  Q7644_RS02960 (Q7644_02985) uvrB 555436..557463 (+) 2028 WP_047917651.1 excinuclease ABC subunit UvrB Machinery gene
  Q7644_RS02965 (Q7644_02990) cah 557641..558399 (-) 759 WP_003688976.1 carbonic anhydrase -
  Q7644_RS02970 (Q7644_02995) - 558808..559155 (-) 348 WP_010357745.1 hypothetical protein -
  Q7644_RS02975 (Q7644_03000) trmB 559479..560195 (-) 717 WP_003691335.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  Q7644_RS02980 (Q7644_03005) - 560317..561720 (-) 1404 Protein_582 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 675 a.a.        Molecular weight: 76977.39 Da        Isoelectric Point: 5.0489

>NTDB_id=789957 Q7644_RS02960 WP_047917651.1 555436..557463(+) (uvrB) [Neisseria gonorrhoeae strain 2004S05-027]
MEVIRYPNSPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMAHNKTLAAQLY
AEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRLSATKNLMTRDDVIIVATVSAIYGIGDPTEY
QQMVLSVKEGDTIEQRDIIATLVSMQYERGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSL
HQRVGRYTVFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCKGIENYSRHFS
GKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDYGFRLPSARDNRPLKFHEFEKVMPQTVFVSA
TPAKYEEEHAGQVVEQVVRPTGLVDPQTIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRY
LHSDIDTVERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAARNVNGVAILYAD
KITDSMKAAVDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEEDSGKGRRQGKNKVKVGEIHNEEDAIKEIAKL
EKAMQQAARDLQFEEAAVLRDRIRNIKENLLFGAE

Nucleotide


Download         Length: 2028 bp        

>NTDB_id=789957 Q7644_RS02960 WP_047917651.1 555436..557463(+) (uvrB) [Neisseria gonorrhoeae strain 2004S05-027]
ATGGAAGTCATCCGATACCCAAATTCCCCCTTCAAACTCCACCAACCCTTCCCGCCCGCAGGCGACCAGCCCACCGCCAT
TGCGGGCCTGCTCGAAGGGCTTTCAGACGGCCTTGCCTACCAAACCCTGCTCGGCGTAACCGGTTCGGGCAAAACCTACA
CGATGGCGAACGTCATCGCGCAAAGCGGCAGACCCGCCATCATTATGGCGCACAACAAAACCCTTGCCGCCCAGCTTTAT
GCCGAAATGCGCGAGTTTTTCCCCGAAAACGCAGTGGAATATTTCGTGTCGTATTACGACTATTACCAGCCCGAAGCCTA
TGTGCCCAGCCGCGATTTGTTCATCGAAAAAGACAGCGCGATCAACGAACACATCGAGCAGATGCGCCTTTCCGCCACCA
AAAACCTGATGACGCGCGACGACGTGATTATCGTCGCCACCGTGTCCGCCATTTACGGTATCGGCGACCCGACCGAGTAT
CAACAAATGGTGCTGTCCGTAAAAGAAGGCGACACCATCGAGCAGCGCGACATCATCGCCACGCTCGTTTCCATGCAGTA
CGAACGCGGCGATTTGGACTTCAAACGCGGCAGCTTCCGCGTGCGCGGCGACGTGATTGACGTGTACCCCGCCGAAAGCT
CCGAAAACGCCTTGCGTATCAGCCTGTTTGATGACGAAATCGACCGCCTCGATATGTTCGACCCGCTTTCAGGCAGCCTG
CACCAGCGTGTCGGACGCTACACCGTCTTCCCGTCCAGCCACTACGTTACCCCGCGCGACACCGTATTGCGCGCCTGCGA
ATCCATCAAAGAAGAATTGCGCGAACGCATCGAATTTTTCGCTCGCGAACAACGCCCCGTCGAGCAACAACGCATCGAAC
AGCGCACCCGTTTCGACCTCGAAATGCTCTACGAAATGGGCTTCTGCAAAGGCATTGAAAACTACTCCCGCCACTTCTCC
GGTAAAAAAGAAGGCGAACCGCCGCCCACGCTGATGGACTACCTGCCCGACAACGCCATCATGTTCATCGACGAAAGCCA
CGTTACCGTTACCCAAATCGGCGGCATGTACAAAGGCGACGCATCGCGCAAGCAAAACCTCGTGGACTACGGCTTCCGCC
TGCCTTCCGCCCGCGACAACCGCCCGCTCAAATTCCACGAATTTGAAAAAGTCATGCCGCAAACCGTCTTCGTTTCCGCC
ACCCCCGCGAAATACGAAGAAGAACACGCCGGACAAGTCGTCGAACAAGTCGTCCGCCCCACAGGGCTGGTCGACCCCCA
AACCATCATCCGCCCCGTCGCCACCCAAGTCGACGATTTAATGAGCGAAATCAACGACCGTATTCAAAAAGGCGAACGTG
TGCTCGTTACCACCCTTACCAAACGCATGGCGGAGCAACTCACCGACTATTACAGCGAACTCGGCATCAAAGTGCGCTAC
CTGCACAGCGACATCGACACCGTCGAACGCGTTGAAATCATTAGAGATTTGCGGCTCGGCCTGTTTGACGTACTCGTTGG
TATCAACCTGTTGCGCGAAGGCCTCGACATCCCCGAAGTCTCCCTCGTCGCCATCCTCGATGCCGACAAAGAAGGCTTCC
TGCGCTCCCACCGCAGCCTGATTCAAACCATAGGCCGCGCCGCGCGCAACGTGAACGGCGTCGCCATCCTGTACGCCGAC
AAAATTACCGACTCCATGAAAGCCGCCGTCGACGAAACCGAACGCCGCCGCGAAAAACAGATTAAATTCAACGAAGAACA
CGGTATCGTGCCGCAGCAGATTAAAAAACAGGTCAAAGACATCATCGACGGCGTGTACCACGAAGAAGACAGTGGCAAAG
GCCGTAGACAAGGCAAAAACAAGGTCAAAGTCGGCGAAATCCACAACGAAGAAGACGCGATTAAAGAAATCGCCAAACTG
GAAAAAGCCATGCAGCAGGCGGCTAGGGATTTACAGTTTGAAGAAGCTGCTGTGTTGAGGGATAGGATTAGGAATATTAA
AGAGAATTTGTTGTTTGGGGCGGAGTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(444-549)

Type III restriction enzyme, res subunit (ResIII)

(23-144)

UvrB interaction domain (UvrB_inter)

(165-255)

UvrB/uvrC motif (UVR)

(635-668)

Ultra-violet resistance protein B (UvrB)

(557-598)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.204

98.222

0.542
  uvrB Streptococcus pneumoniae R6

55.204

98.222

0.542
  uvrB Streptococcus pneumoniae D39

55.204

98.222

0.542