Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   PUW76_RS03505 Genome accession   NZ_CP118048
Coordinates   719269..720942 (+) Length   557 a.a.
NCBI ID   WP_033601127.1    Uniprot ID   -
Organism   Enterococcus faecalis strain VSI48     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 714269..725942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW76_RS03475 (PUW76_03475) - 714520..715365 (+) 846 WP_002419352.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  PUW76_RS03480 (PUW76_03480) xseA 715375..716721 (+) 1347 WP_002355877.1 exodeoxyribonuclease VII large subunit -
  PUW76_RS03485 (PUW76_03485) - 716723..716953 (+) 231 WP_002383396.1 exodeoxyribonuclease VII small subunit -
  PUW76_RS03490 (PUW76_03490) - 716953..717834 (+) 882 WP_002355879.1 polyprenyl synthetase family protein -
  PUW76_RS03495 (PUW76_03495) - 717848..718663 (+) 816 WP_002383397.1 TlyA family RNA methyltransferase -
  PUW76_RS03500 (PUW76_03500) - 718802..719251 (+) 450 WP_002358881.1 ArgR family transcriptional regulator -
  PUW76_RS03505 (PUW76_03505) recN 719269..720942 (+) 1674 WP_033601127.1 DNA repair protein RecN Machinery gene
  PUW76_RS03510 (PUW76_03510) - 721033..721143 (-) 111 WP_002383399.1 DUF4044 domain-containing protein -
  PUW76_RS03515 (PUW76_03515) - 721211..722176 (-) 966 WP_002383400.1 magnesium transporter CorA family protein -
  PUW76_RS03520 (PUW76_03520) - 722421..722813 (+) 393 WP_002383401.1 DUF3397 domain-containing protein -
  PUW76_RS03525 (PUW76_03525) mraZ 723047..723532 (+) 486 WP_002383402.1 division/cell wall cluster transcriptional repressor MraZ -
  PUW76_RS03530 (PUW76_03530) rsmH 723547..724503 (+) 957 WP_010710705.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  PUW76_RS03535 (PUW76_03535) ftsL 724520..724927 (+) 408 WP_002419342.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62659.05 Da        Isoelectric Point: 4.5521

>NTDB_id=789516 PUW76_RS03505 WP_033601127.1 719269..720942(+) (recN) [Enterococcus faecalis strain VSI48]
MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGANKCTLEGLFSMPKSQELKQLL
EELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKRIGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLAVKE
KYTQAYQEYRALEAKVRKRQKNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE
DDSSLDKIGTSMNELASIESLDSEYKTLSDTVQNAYYLLQEASGDLSRLIDGLELDEGRLNEVENRLELIRQMKRKYGDS
IETILSYYEEITKELAEADFLEGGTGDLEALLAEKQQAAHQQALVLRKERKRLAKELEQQILTELKELYLERTEFEVRFT
ELEHLQENGLDGVEFYITTNPGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ
ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRILSEKERVNEIARMLAGSEITKLTIEHAQELLAMAKK

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=789516 PUW76_RS03505 WP_033601127.1 719269..720942(+) (recN) [Enterococcus faecalis strain VSI48]
ATGTTACAAGAACTTTCCGTGAAAAATTTTGCGATTATCTCTTCGTTACAATTAGAGTTTCAAATGGGTATGACCGTTTT
AACGGGAGAAACGGGTGCGGGGAAATCCATCATTATTGATGCAATGGGATTACTCACAGGCGGACGCGGCTCCAGTGACT
ATATTCGTCAAGGAGCAAATAAATGCACCTTAGAAGGACTTTTTTCAATGCCGAAAAGTCAAGAATTAAAGCAATTATTA
GAAGAATTAGGTATTGAAACAGAAGAAGATTCTTTAGTGATTCAACGAGATATTTCCGCTTCTGGTAAAAATGTTTGCCG
TGTCAACGGACGAATTGTCAACATTACTAATTTAAAAAGAATTGGGGAATATTTAGTAGATATTCATGGCCAAAATGAAC
ATCAAGAATTGATGCAAAGTGAACGCCATATTGATATGTTAGATGAATTTGGTGGGAAAAAACTTTTAGCAGTCAAAGAA
AAATATACACAGGCGTATCAAGAGTATCGCGCACTCGAAGCCAAAGTCAGAAAGCGACAAAAAAATGAAAAAGAATTTGC
CCAAAGAATGGACATGCTTCATTTTCAAAGTGATGAAATTGCTAGTGCACAGTTAGTCGCTGGTGAAGAAGAACAATTGC
TAGAAGAACGCAATAAACTGAACAATTTTCAAAAGATTGCTGATGCACTGACGATTAGTTATGCCGCGCTAAATGGTGAA
GACGATAGTAGTTTGGATAAAATTGGAACAAGTATGAATGAACTCGCTTCGATTGAATCCCTTGATTCAGAATATAAAAC
ATTGTCAGATACTGTTCAAAATGCTTACTACTTACTACAAGAAGCCAGTGGAGATCTTTCTAGGTTAATTGATGGCTTAG
AACTAGACGAAGGTCGCTTGAATGAAGTAGAAAATCGTTTGGAATTAATCCGTCAAATGAAACGTAAATATGGCGATTCA
ATCGAAACGATTTTATCTTACTATGAAGAAATCACCAAAGAGTTAGCAGAGGCTGATTTTTTGGAAGGTGGTACAGGTGA
CTTAGAAGCATTGCTTGCAGAGAAACAACAAGCGGCTCATCAACAAGCGTTAGTTTTACGAAAAGAGCGAAAGCGCCTAG
CCAAAGAGCTCGAACAACAAATTTTAACCGAATTAAAAGAACTATATTTGGAGCGAACTGAATTTGAAGTCCGCTTTACA
GAACTTGAGCATTTACAAGAAAATGGCTTAGACGGAGTAGAATTTTATATTACTACTAACCCAGGGGAACCATTAAAACC
GTTAGTTCGGGTGGCTTCTGGCGGAGAACTTTCGCGAGTGATGCTAGCTATGAAAACAATCTTTTCTCAAACGCAAGGGA
TCACTAGTATTGTTTTTGATGAAGTGGATACAGGAGTCAGTGGCCGAGTAGCACAGGCGATTGCCGATAAAATTTATCAG
ATTTCAGAAAATTCGCAGGTGTTGTGTATCACGCACTTGCCCCAAGTGGCGGCCGTTGCCGATGAACATTATTTTATTGA
AAAAGAAATCGTGGCGGGTCGGACAGAAACAAGCGTCCGAATTTTATCTGAAAAAGAGCGAGTAAACGAAATTGCGCGTA
TGCTCGCAGGAAGTGAAATTACGAAATTAACCATTGAACATGCACAAGAGCTGTTAGCGATGGCGAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.691

100

0.501