Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   PT671_RS14775 Genome accession   NZ_CP118021
Coordinates   2986318..2986962 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus spizizenii strain B-354     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2981318..2991962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT671_RS14745 - 2981711..2982079 (-) 369 WP_003220698.1 hypothetical protein -
  PT671_RS14750 - 2982194..2982310 (-) 117 WP_136975871.1 hypothetical protein -
  PT671_RS14755 degQ 2982542..2982682 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  PT671_RS14760 - 2982868..2983728 (+) 861 WP_003220710.1 polyprenyl synthetase family protein -
  PT671_RS14765 comX 2983741..2983905 (+) 165 WP_003220712.1 competence pheromone ComX -
  PT671_RS14770 comP 2983913..2986237 (+) 2325 WP_003220714.1 histidine kinase Regulator
  PT671_RS14775 comA 2986318..2986962 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  PT671_RS14780 - 2986978..2987358 (+) 381 WP_003220719.1 hotdog fold thioesterase -
  PT671_RS14785 mnhG 2987397..2987771 (-) 375 WP_003220721.1 monovalent cation/H(+) antiporter subunit G -
  PT671_RS14790 - 2987755..2988039 (-) 285 WP_003220724.1 Na(+)/H(+) antiporter subunit F1 -
  PT671_RS14795 - 2988039..2988515 (-) 477 WP_003220727.1 Na+/H+ antiporter subunit E -
  PT671_RS14800 - 2988521..2990002 (-) 1482 WP_003220728.1 Na+/H+ antiporter subunit D -
  PT671_RS14805 - 2989995..2990336 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  PT671_RS14810 - 2990336..2990767 (-) 432 WP_003220732.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=789170 PT671_RS14775 WP_003220716.1 2986318..2986962(+) (comA) [Bacillus spizizenii strain B-354]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=789170 PT671_RS14775 WP_003220716.1 2986318..2986962(+) (comA) [Bacillus spizizenii strain B-354]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAACCT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATATTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTTGAGGATTATTTTGAGGAAGCGATTCGTGCGGGACTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGACGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGTTTTACAAACCAAGAAATCGCAGATGCACTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCCTGACATCAATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGATGGTGTAC
TGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1