Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   PT671_RS11700 Genome accession   NZ_CP118021
Coordinates   2367101..2367220 (-) Length   39 a.a.
NCBI ID   WP_003222023.1    Uniprot ID   A0A9Q4EZF5
Organism   Bacillus spizizenii strain B-354     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 2362101..2372220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT671_RS11685 - 2362908..2364983 (-) 2076 WP_003222029.1 transglycosylase domain-containing protein -
  PT671_RS11690 speE 2365185..2366015 (+) 831 WP_003222027.1 spermidine synthase -
  PT671_RS11695 speB 2366076..2366948 (+) 873 WP_003222025.1 agmatinase -
  PT671_RS11700 phrF 2367101..2367220 (-) 120 WP_003222023.1 phosphatase RapF inhibitor PhrF Regulator
  PT671_RS11705 rapF 2367204..2368349 (-) 1146 WP_003222022.1 response regulator aspartate phosphatase RapF Regulator
  PT671_RS11710 - 2368576..2369931 (+) 1356 WP_003222017.1 YncE family protein -
  PT671_RS21515 - 2369943..2370062 (+) 120 Protein_2264 hypothetical protein -
  PT671_RS11715 albG 2370068..2370769 (-) 702 WP_003222015.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  PT671_RS11720 - 2370766..2372049 (-) 1284 WP_003222013.1 M16 family metallopeptidase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4226.12 Da        Isoelectric Point: 10.4997

>NTDB_id=789157 PT671_RS11700 WP_003222023.1 2367101..2367220(-) (phrF) [Bacillus spizizenii strain B-354]
MKLKSKLLLSCLALSTVFIATNIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=789157 PT671_RS11700 WP_003222023.1 2367101..2367220(-) (phrF) [Bacillus spizizenii strain B-354]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCCCTAAGCACTGTTTTCATCGCAACAAATATTGCAAATGCACC
TACCCACCAAATTGAAGTTGCACAGCGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

92.593

69.231

0.641
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487