Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   PUN50_RS01360 Genome accession   NZ_CP117988
Coordinates   286072..286704 (-) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio campbellii strain 20220413_1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 281072..291704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN50_RS01345 (PUN50_01345) astA 282285..283304 (+) 1020 WP_274290750.1 arginine N-succinyltransferase -
  PUN50_RS01350 (PUN50_01350) astD 283333..284790 (+) 1458 WP_274290751.1 succinylglutamate-semialdehyde dehydrogenase -
  PUN50_RS01355 (PUN50_01355) - 285055..285846 (+) 792 WP_274290752.1 DUF1338 domain-containing protein -
  PUN50_RS01360 (PUN50_01360) crp 286072..286704 (-) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  PUN50_RS01365 (PUN50_01365) - 286944..287813 (-) 870 WP_274290753.1 phosphoribulokinase -
  PUN50_RS01370 (PUN50_01370) - 287938..288150 (-) 213 WP_005432763.1 YheU family protein -
  PUN50_RS01375 (PUN50_01375) - 288221..289228 (-) 1008 WP_045370245.1 hydrolase -
  PUN50_RS01380 (PUN50_01380) - 289329..289808 (-) 480 WP_005432772.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=788942 PUN50_RS01360 WP_005381432.1 286072..286704(-) (crp) [Vibrio campbellii strain 20220413_1]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=788942 PUN50_RS01360 WP_005381432.1 286072..286704(-) (crp) [Vibrio campbellii strain 20220413_1]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
GAGCACGCTAATTCACGCGGGCGAAAAAGCAGAGACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAAGGCGACTTCATTGGTGAGCTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGCGCTAAATCTCCTTGTGAAGTGGCAGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTTAACCCAGACATCCTAATGCGCCTTTCTGCGCAAATGGCTCGTCGTCTACAAGTTACTAGCCAAAAAGTGGGTG
ACCTAGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACTCTTCTGAACCTTGCTAAACAGCCAGATGCGATGACGCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATTGTTGGCTGTTCTCGTGAGACAGTAGGCCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCGCACGGTAAAACTATCGTTGTTTACGGGACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471