Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   PUN35_RS20630 Genome accession   NZ_CP117986
Coordinates   3855050..3855694 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus sp. N3378-2at     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3850050..3860694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN35_RS20600 - 3850401..3850769 (-) 369 WP_014477834.1 hypothetical protein -
  PUN35_RS20605 - 3850883..3851008 (-) 126 WP_003228793.1 hypothetical protein -
  PUN35_RS20610 degQ 3851230..3851370 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  PUN35_RS20615 - 3851555..3852418 (+) 864 WP_014480705.1 polyprenyl synthetase family protein -
  PUN35_RS20620 comX 3852420..3852641 (+) 222 WP_014480704.1 competence pheromone ComX -
  PUN35_RS20625 comP 3852657..3854969 (+) 2313 WP_014480703.1 sensor histidine kinase Regulator
  PUN35_RS20630 comA 3855050..3855694 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  PUN35_RS20635 - 3855713..3856093 (+) 381 WP_017695528.1 hotdog fold thioesterase -
  PUN35_RS20640 mnhG 3856132..3856506 (-) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  PUN35_RS20645 - 3856490..3856774 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  PUN35_RS20650 - 3856774..3857250 (-) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  PUN35_RS20655 - 3857256..3858737 (-) 1482 WP_033881486.1 Na+/H+ antiporter subunit D -
  PUN35_RS20660 - 3858730..3859071 (-) 342 WP_014480700.1 Na(+)/H(+) antiporter subunit C -
  PUN35_RS20665 - 3859071..3859502 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=788937 PUN35_RS20630 WP_003220716.1 3855050..3855694(+) (comA) [Bacillus sp. N3378-2at]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=788937 PUN35_RS20630 WP_003220716.1 3855050..3855694(+) (comA) [Bacillus sp. N3378-2at]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATAGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1