Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PT745_RS09820 Genome accession   NZ_CP117973
Coordinates   1922164..1922646 (+) Length   160 a.a.
NCBI ID   WP_003743379.1    Uniprot ID   A0A6Z7XFT8
Organism   Listeria monocytogenes strain B-33116     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1917164..1927646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT745_RS09755 - 1917229..1918206 (+) 978 WP_003743364.1 DNA cytosine methyltransferase -
  PT745_RS09760 - 1918203..1918397 (+) 195 WP_003735028.1 hypothetical protein -
  PT745_RS09765 - 1918424..1919029 (+) 606 WP_003743367.1 DUF1642 domain-containing protein -
  PT745_RS09770 - 1919026..1919205 (+) 180 WP_003735032.1 hypothetical protein -
  PT745_RS09775 - 1919202..1919387 (+) 186 WP_003735031.1 hypothetical protein -
  PT745_RS09780 - 1919384..1919887 (+) 504 WP_003743369.1 YopX family protein -
  PT745_RS09785 - 1919887..1920588 (+) 702 WP_003743371.1 hypothetical protein -
  PT745_RS09790 - 1920601..1920870 (+) 270 WP_003735015.1 hypothetical protein -
  PT745_RS09795 - 1920867..1921052 (+) 186 WP_003735014.1 hypothetical protein -
  PT745_RS09800 - 1921049..1921339 (+) 291 WP_003735013.1 hypothetical protein -
  PT745_RS09805 - 1921339..1921524 (+) 186 WP_003743374.1 hypothetical protein -
  PT745_RS09810 - 1921525..1921752 (+) 228 WP_003743375.1 ASCH/PUA domain-containing protein -
  PT745_RS09815 - 1921763..1922164 (+) 402 WP_003743377.1 hypothetical protein -
  PT745_RS09820 ssbA 1922164..1922646 (+) 483 WP_003743379.1 single-stranded DNA-binding protein Machinery gene
  PT745_RS09825 - 1922665..1922856 (+) 192 WP_003743380.1 hypothetical protein -
  PT745_RS09830 - 1922801..1923205 (+) 405 WP_031541233.1 DUF1064 domain-containing protein -
  PT745_RS09835 - 1923209..1923592 (+) 384 WP_003743384.1 DUF2481 family protein -
  PT745_RS09840 - 1923585..1923710 (+) 126 WP_021496281.1 hypothetical protein -
  PT745_RS09845 - 1923721..1923885 (+) 165 WP_003727776.1 hypothetical protein -
  PT745_RS09850 - 1923904..1924338 (+) 435 WP_003743388.1 ArpU family phage packaging/lysis transcriptional regulator -
  PT745_RS09855 - 1924678..1925421 (+) 744 WP_230864795.1 hypothetical protein -
  PT745_RS09860 - 1925487..1926029 (+) 543 WP_009912949.1 terminase small subunit -
  PT745_RS09865 - 1925998..1927329 (+) 1332 WP_058833462.1 PBSX family phage terminase large subunit -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17838.59 Da        Isoelectric Point: 4.8008

>NTDB_id=788723 PT745_RS09820 WP_003743379.1 1922164..1922646(+) (ssbA) [Listeria monocytogenes strain B-33116]
MMNRVVLVGRLTKDPELRYTPAGLAVTTFTLAVNRAFTNQNGEREADFIQCVVWRKPAENAANFLKKGSMAGVDGRIQTR
NYEDNDGKRVFVTEVVAESVQFLEPKNNNAEGATSNNYQNQANYSNNNQTSSYRADTSQKSDSFANEGKAIDINEDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=788723 PT745_RS09820 WP_003743379.1 1922164..1922646(+) (ssbA) [Listeria monocytogenes strain B-33116]
ATGATGAATCGTGTAGTACTTGTAGGACGATTAACGAAAGACCCTGAATTACGTTACACTCCAGCTGGATTAGCAGTAAC
GACTTTTACATTAGCTGTAAACCGCGCTTTCACTAATCAGAATGGAGAACGAGAAGCCGACTTTATTCAATGTGTTGTTT
GGCGTAAACCAGCCGAAAACGCAGCTAATTTCTTGAAAAAAGGAAGCATGGCGGGCGTTGATGGACGAATACAGACTCGA
AATTATGAGGACAACGACGGTAAACGCGTTTTTGTTACAGAAGTAGTTGCTGAATCAGTTCAATTCTTAGAGCCTAAAAA
TAACAACGCAGAAGGCGCTACATCAAATAATTACCAAAACCAAGCTAATTATTCAAATAACAACCAAACAAGCTCATATC
GAGCGGATACGAGCCAGAAGAGCGATTCATTTGCAAATGAGGGCAAGGCGATTGATATCAATGAAGATGATTTGCCATTT
TGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.372

100

0.681
  ssb Latilactobacillus sakei subsp. sakei 23K

55.882

100

0.594
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

66.25

0.406