Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PQ460_RS00110 Genome accession   NZ_CP117876
Coordinates   18401..18907 (+) Length   168 a.a.
NCBI ID   WP_273614288.1    Uniprot ID   A0AAX3M1H4
Organism   Paenibacillus sp. KACC 21273     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 13401..23907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQ460_RS00075 (PQ460_00075) - 13570..14742 (+) 1173 WP_274171331.1 aminotransferase class V-fold PLP-dependent enzyme -
  PQ460_RS00080 (PQ460_00080) - 14840..15352 (+) 513 WP_273614292.1 DUF4446 family protein -
  PQ460_RS00085 (PQ460_00085) - 15519..15770 (+) 252 WP_274171332.1 DUF3343 domain-containing protein -
  PQ460_RS00090 (PQ460_00090) - 15783..16811 (+) 1029 WP_273614290.1 mechanosensitive ion channel domain-containing protein -
  PQ460_RS00095 (PQ460_00095) - 16918..17136 (+) 219 WP_204825752.1 DUF951 domain-containing protein -
  PQ460_RS00105 (PQ460_00105) rpsF 18073..18360 (+) 288 WP_204825753.1 30S ribosomal protein S6 -
  PQ460_RS00110 (PQ460_00110) ssbA 18401..18907 (+) 507 WP_273614288.1 single-stranded DNA-binding protein Machinery gene
  PQ460_RS00115 (PQ460_00115) rpsR 18929..19204 (+) 276 WP_069326395.1 30S ribosomal protein S18 -
  PQ460_RS00120 (PQ460_00120) - 19430..20452 (+) 1023 WP_273614287.1 LCP family protein -
  PQ460_RS00125 (PQ460_00125) - 20621..21079 (+) 459 WP_204825756.1 CBS domain-containing protein -
  PQ460_RS00130 (PQ460_00130) - 21176..22123 (+) 948 WP_274171333.1 DUF2232 domain-containing protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18563.12 Da        Isoelectric Point: 4.7075

>NTDB_id=788189 PQ460_RS00110 WP_273614288.1 18401..18907(+) (ssbA) [Paenibacillus sp. KACC 21273]
MLNRVILIGRLTKDPELRYTPAGVAVTQFTLAVDRPFTSQGGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESNRDGGGSGGSSREESSNNSNNSGGGNNRSNYNSNNGNNNSRDNQDPFSDDGKPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=788189 PQ460_RS00110 WP_273614288.1 18401..18907(+) (ssbA) [Paenibacillus sp. KACC 21273]
TTGCTAAACCGTGTCATTTTGATCGGCCGGTTAACCAAAGACCCGGAGCTTCGCTATACACCCGCTGGTGTAGCTGTAAC
CCAGTTTACATTAGCAGTGGATCGTCCTTTTACGAGCCAAGGTGGAGAGCGCGAAGCGGACTTTATCCCGGTCGTCACTT
GGAGACAACTGGCTGAAACTTGTGCTAACTATTTACGAAAAGGTCGCTTAACTGCGGTTGAAGGCCGAATTCAAGTACGT
AATTATGAGAATAATGAAGGAAAACGTGTATACGTGACTGAAGTTATTGCTGATAATGTTCGTTTCCTTGAATCTAATCG
TGATGGTGGCGGCAGTGGAGGATCATCCCGTGAAGAGTCTTCCAATAATTCTAACAATAGTGGCGGCGGTAATAACCGTA
GCAACTATAATAGTAATAATGGAAACAACAACTCACGAGATAACCAGGACCCATTCTCTGATGACGGTAAACCGATAGAT
ATTTCCGATGATGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.192

100

0.613
  ssb Latilactobacillus sakei subsp. sakei 23K

50.289

100

0.518
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.654

61.905

0.363