Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   Q6379_RS02670 Genome accession   NZ_CP130892
Coordinates   519202..519810 (+) Length   202 a.a.
NCBI ID   WP_047921003.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ204705     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 514202..524810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6379_RS02645 (Q6379_02645) - 514527..515108 (-) 582 WP_003690895.1 superoxide dismutase -
  Q6379_RS02650 (Q6379_02650) dnaB 515272..516678 (+) 1407 WP_003690896.1 replicative DNA helicase -
  Q6379_RS02655 (Q6379_02655) pilH 516986..517651 (+) 666 WP_047921008.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q6379_RS02660 (Q6379_02660) pilV/pilI 517683..518291 (+) 609 WP_304672949.1 type IV pilus modification protein PilV Regulator
  Q6379_RS02665 (Q6379_02665) pilJ 518288..519223 (+) 936 WP_047921001.1 PilW family protein Machinery gene
  Q6379_RS02670 (Q6379_02670) pilK 519202..519810 (+) 609 WP_047921003.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  Q6379_RS02675 (Q6379_02675) pilL 519812..520285 (+) 474 WP_304672966.1 PilX family type IV pilin Machinery gene
  Q6379_RS02680 (Q6379_02680) - 520355..520663 (-) 309 WP_003706588.1 AzlD family protein -
  Q6379_RS02685 (Q6379_02685) - 520660..521371 (-) 712 Protein_521 AzlC family ABC transporter permease -
  Q6379_RS02690 (Q6379_02690) dut 521537..521989 (+) 453 WP_003701071.1 dUTP diphosphatase -
  Q6379_RS02695 (Q6379_02695) dapC 522061..523248 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  Q6379_RS02700 (Q6379_02700) yaaA 523404..524183 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22012.90 Da        Isoelectric Point: 7.5809

>NTDB_id=788140 Q6379_RS02670 WP_047921003.1 519202..519810(+) (pilK) [Neisseria gonorrhoeae strain NJ204705]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCENGLCTAVNVRTNGANEETFDNIVVKGKPTVEAVKRSCPAKSGKNSTDLCIDNQGVEYKKGTASVSKMPR
YIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=788140 Q6379_RS02670 WP_047921003.1 519202..519810(+) (pilK) [Neisseria gonorrhoeae strain NJ204705]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCTTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACGTTTAGCGAAAACTGTGAAAACGGCCTGTGTACCGCAGTGAATGTACGGACAAATGGTGCTAATGA
AGAGACTTTTGACAATATCGTGGTGAAAGGCAAGCCTACCGTTGAGGCCGTGAAGCGTTCTTGCCCTGCAAAGTCTGGCA
AAAATTCTACCGACCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGGACGGCAAGCGTCAGCAAAATGCCGCGC
TATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-197)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

92.611

100

0.931