Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   Q6379_RS02675 Genome accession   NZ_CP130892
Coordinates   519812..520285 (+) Length   157 a.a.
NCBI ID   WP_304672966.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ204705     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 514812..525285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6379_RS02650 (Q6379_02650) dnaB 515272..516678 (+) 1407 WP_003690896.1 replicative DNA helicase -
  Q6379_RS02655 (Q6379_02655) pilH 516986..517651 (+) 666 WP_047921008.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q6379_RS02660 (Q6379_02660) pilV/pilI 517683..518291 (+) 609 WP_304672949.1 type IV pilus modification protein PilV Regulator
  Q6379_RS02665 (Q6379_02665) pilJ 518288..519223 (+) 936 WP_047921001.1 PilW family protein Machinery gene
  Q6379_RS02670 (Q6379_02670) pilK 519202..519810 (+) 609 WP_047921003.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  Q6379_RS02675 (Q6379_02675) pilL 519812..520285 (+) 474 WP_304672966.1 PilX family type IV pilin Machinery gene
  Q6379_RS02680 (Q6379_02680) - 520355..520663 (-) 309 WP_003706588.1 AzlD family protein -
  Q6379_RS02685 (Q6379_02685) - 520660..521371 (-) 712 Protein_521 AzlC family ABC transporter permease -
  Q6379_RS02690 (Q6379_02690) dut 521537..521989 (+) 453 WP_003701071.1 dUTP diphosphatase -
  Q6379_RS02695 (Q6379_02695) dapC 522061..523248 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  Q6379_RS02700 (Q6379_02700) yaaA 523404..524183 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17560.33 Da        Isoelectric Point: 9.5776

>NTDB_id=788141 Q6379_RS02675 WP_304672966.1 519812..520285(+) (pilL) [Neisseria gonorrhoeae strain NJ204705]
MEQKGFTLIEMMIVVTILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDDNDILKSKLEIFVSGYKM
NPKIAKKYSVSVKFVDAEKPRVYRLVGVPNAGTGYTLSVWMNSVGDGYKCRNATSAQTYSETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=788141 Q6379_RS02675 WP_304672966.1 519812..520285(+) (pilL) [Neisseria gonorrhoeae strain NJ204705]
ATGGAGCAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCACAATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACGATAATGATATCCTCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAAGTTTGTCGATGCGGAAAAACCAAGGGTATACAGGTTGGTCGG
TGTTCCGAACGCGGGGACGGGTTATACCTTGTCGGTATGGATGAACAGCGTGGGTGACGGATACAAATGCCGTAATGCCA
CTTCTGCCCAGACCTATTCGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

96.178

100

0.962
  pilX Neisseria meningitidis 8013

83.439

100

0.834