Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   PO845_RS02075 Genome accession   NZ_CP117857
Coordinates   433556..433675 (+) Length   39 a.a.
NCBI ID   WP_031378677.1    Uniprot ID   -
Organism   Bacillus velezensis strain PT4     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 428556..438675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PO845_RS02060 (PO845_02060) - 430168..430851 (+) 684 WP_007410267.1 response regulator transcription factor -
  PO845_RS02065 (PO845_02065) - 430838..432271 (+) 1434 WP_162492834.1 HAMP domain-containing sensor histidine kinase -
  PO845_RS02070 (PO845_02070) rapC 432424..433572 (+) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  PO845_RS02075 (PO845_02075) phrC 433556..433675 (+) 120 WP_031378677.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  PO845_RS02080 (PO845_02080) - 433824..433919 (-) 96 WP_012116800.1 YjcZ family sporulation protein -
  PO845_RS02085 (PO845_02085) - 434014..435378 (-) 1365 WP_280955768.1 aspartate kinase -
  PO845_RS02090 (PO845_02090) ceuB 435792..436745 (+) 954 WP_061890422.1 ABC transporter permease Machinery gene
  PO845_RS02095 (PO845_02095) - 436735..437682 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  PO845_RS02100 (PO845_02100) - 437676..438434 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4240.97 Da        Isoelectric Point: 8.0284

>NTDB_id=788013 PO845_RS02075 WP_031378677.1 433556..433675(+) (phrC) [Bacillus velezensis strain PT4]
MKLKSKWFVICLAAAAIFTVTGAGQPDQADFHVTERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=788013 PO845_RS02075 WP_031378677.1 433556..433675(+) (phrC) [Bacillus velezensis strain PT4]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGCCAGA
TCAGGCTGACTTCCATGTAACTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

75

100

0.769