Detailed information NTG0788012

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: PO845_RS02070
• Genome accession: NZ_CP117857
• Coordinates: 432424..433572 (+)
• Length: 382 a.a.
• NCBI ID: WP_007410270.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain PT4
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 427424..438572

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PO845_RS02050 (PO845_02050)	-	427821..428504 (-)	684	WP_280955765.1	ABC transporter ATP-binding protein	-
PO845_RS02055 (PO845_02055)	-	428519..429955 (-)	1437	WP_228903603.1	ABC transporter permease	-
PO845_RS02060 (PO845_02060)	-	430168..430851 (+)	684	WP_007410267.1	response regulator transcription factor	-
PO845_RS02065 (PO845_02065)	-	430838..432271 (+)	1434	WP_162492834.1	HAMP domain-containing sensor histidine kinase	-
PO845_RS02070 (PO845_02070)	rapC	432424..433572 (+)	1149	WP_007410270.1	Rap family tetratricopeptide repeat protein	Regulator
PO845_RS02075 (PO845_02075)	phrC	433556..433675 (+)	120	WP_031378677.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
PO845_RS02080 (PO845_02080)	-	433824..433919 (-)	96	WP_012116800.1	YjcZ family sporulation protein	-
PO845_RS02085 (PO845_02085)	-	434014..435378 (-)	1365	WP_280955768.1	aspartate kinase	-
PO845_RS02090 (PO845_02090)	ceuB	435792..436745 (+)	954	WP_061890422.1	ABC transporter permease	Machinery gene
PO845_RS02095 (PO845_02095)	-	436735..437682 (+)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
PO845_RS02100 (PO845_02100)	-	437676..438434 (+)	759	WP_003156330.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45475.70 Da
• Isoelectric Point: 4.9916

>NTDB_id=788012 PO845_RS02070 WP_007410270.1 432424..433572(+) (rapC) [Bacillus velezensis strain PT4]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=788012 PO845_RS02070 WP_007410270.1 432424..433572(+) (rapC) [Bacillus velezensis strain PT4]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGATTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568