Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PT012_RS05660 Genome accession   NZ_CP117820
Coordinates   1260298..1260792 (-) Length   164 a.a.
NCBI ID   WP_004083791.1    Uniprot ID   Q9PDI7
Organism   Xylella fastidiosa subsp. multiplex strain ICMP 8740     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1255298..1265792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT012_RS05645 (PT012_05645) gloA 1255590..1256117 (+) 528 WP_004083787.1 lactoylglutathione lyase -
  PT012_RS05650 (PT012_05650) - 1256279..1257475 (-) 1197 WP_027700010.1 cation:proton antiporter -
  PT012_RS05655 (PT012_05655) - 1257792..1258702 (-) 911 Protein_1094 class I SAM-dependent methyltransferase -
  PT012_RS05660 (PT012_05660) ssb 1260298..1260792 (-) 495 WP_004083791.1 single-stranded DNA-binding protein Machinery gene
  PT012_RS05665 (PT012_05665) - 1261041..1262042 (+) 1002 WP_027700011.1 polyprenyl synthetase family protein -
  PT012_RS05670 (PT012_05670) cyoA 1262511..1263470 (+) 960 WP_027700012.1 ubiquinol oxidase subunit II -
  PT012_RS05675 (PT012_05675) cyoB 1263464..1265461 (+) 1998 WP_027700013.1 cytochrome o ubiquinol oxidase subunit I -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18211.20 Da        Isoelectric Point: 5.9575

>NTDB_id=787770 PT012_RS05660 WP_004083791.1 1260298..1260792(-) (ssb) [Xylella fastidiosa subsp. multiplex strain ICMP 8740]
MARGINKVILVGNLGNDPDIKYTQGGMTITTISLATTSVRKDKEGNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEG
SIRYDKFTGQDGQERYVTEIVADEMQMLGGRSDGGGMGGGGERPQRQTSQRQDYAPRRQARQPSQSPQSSPPPMDDFADD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=787770 PT012_RS05660 WP_004083791.1 1260298..1260792(-) (ssb) [Xylella fastidiosa subsp. multiplex strain ICMP 8740]
ATGGCCCGTGGTATCAATAAAGTCATCCTCGTCGGTAACCTCGGTAACGATCCGGATATCAAATACACCCAAGGTGGTAT
GACGATCACTACCATCAGCTTGGCGACAACCAGTGTTCGTAAGGACAAGGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACAGGGTCAAGTTTTTCGGAAAACTCGGTGAGATTGCCGGGGAATATCTACGTAAGGGATCACAGTGCTATATCGAAGGG
AGCATTCGCTATGACAAGTTCACTGGCCAGGATGGTCAGGAGCGCTATGTTACAGAGATTGTTGCTGATGAGATGCAAAT
GTTGGGTGGCCGTAGCGATGGTGGCGGTATGGGCGGGGGCGGTGAGCGCCCACAGCGTCAAACATCGCAGCGTCAGGATT
ACGCCCCACGTCGCCAGGCCCGTCAGCCGTCACAGTCGCCGCAATCTTCACCGCCGCCGATGGACGATTTCGCTGATGAC
GATATTCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PDI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.153

100

0.53
  ssb Glaesserella parasuis strain SC1401

45.81

100

0.5
  ssb Neisseria meningitidis MC58

41.618

100

0.439
  ssb Neisseria gonorrhoeae MS11

41.04

100

0.433