Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PT258_RS13940 Genome accession   NZ_CP117814
Coordinates   3131106..3131765 (-) Length   219 a.a.
NCBI ID   WP_011947563.1    Uniprot ID   -
Organism   Legionella pneumophila strain D5241     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3126106..3136765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT258_RS13925 (PT258_13925) - 3127059..3127718 (+) 660 WP_011947560.1 hypothetical protein -
  PT258_RS13930 (PT258_13930) - 3127886..3129214 (+) 1329 WP_061784476.1 DUF1566 domain-containing protein -
  PT258_RS13935 (PT258_13935) uvrC 3129238..3131094 (-) 1857 WP_042754708.1 excinuclease ABC subunit UvrC -
  PT258_RS13940 (PT258_13940) letA 3131106..3131765 (-) 660 WP_011947563.1 two-component system response regulator LetA Regulator
  PT258_RS13945 (PT258_13945) phhA 3131890..3132708 (-) 819 WP_015961727.1 phenylalanine 4-monooxygenase -
  PT258_RS13950 (PT258_13950) - 3133148..3134245 (+) 1098 WP_027226738.1 competence/damage-inducible protein A -
  PT258_RS13955 (PT258_13955) cgtA 3134204..3135229 (-) 1026 WP_015961729.1 Obg family GTPase CgtA -
  PT258_RS13960 (PT258_13960) rpmA 3135443..3135721 (-) 279 WP_010948350.1 50S ribosomal protein L27 -
  PT258_RS13965 (PT258_13965) rplU 3135734..3136045 (-) 312 WP_010948351.1 50S ribosomal protein L21 -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24566.53 Da        Isoelectric Point: 5.1572

>NTDB_id=787668 PT258_RS13940 WP_011947563.1 3131106..3131765(-) (letA) [Legionella pneumophila strain D5241]
MIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGWEVTRRLKKTNPNIKVIA
VTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQEPQDSPFDLLSEREMQVMLMI
TSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRIIEHPNDLSQDD

Nucleotide


Download         Length: 660 bp        

>NTDB_id=787668 PT258_RS13940 WP_011947563.1 3131106..3131765(-) (letA) [Legionella pneumophila strain D5241]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTAGAATGGGCATTCGACGATTGCTTGAAGATATGTCGGATGT
TGATGTGGTTGCAGATGCTGAAAGTGGTGAGCAGGCTTTAGCTTATGTGAAAACCCACTCCCCTGATGTCGTATTATTAG
ACATGAAAATGCCTGGGATAGATGGGTGGGAAGTGACACGTCGTTTAAAAAAAACAAACCCAAATATTAAAGTCATAGCC
GTTACAGCTATTTGCTCAGATCCTCTCCCTACTCGAGTATTGCAATTAGGTGCTATGGGATACCTTACTAAAGAATCAGG
GGCTGAAGAAATGGCTGCTGCAATTCGTAAAGTGGCTAAAGGTGAGAAATATCTTAGTGCCGAGATTGCACAAAAAATGG
CAATTAATAGTCTTCAGGAGCCTCAGGATTCCCCCTTTGATTTATTGTCTGAAAGAGAAATGCAAGTCATGTTGATGATT
ACGAGCGGCATGAATGTACAAGACATTGCTGATAGATTATTTTTAAGTAGTAAAACCATCAATGGTTATCGATATAGGAT
GTTTGAAAAATTGGGGATTAAAAATGATGTGGAGCTTACTTATTTGGCTATGAAGCACCGCATTATTGAACACCCCAATG
ATTTGTCACAAGATGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

100

100

1
  letA Legionella pneumophila strain ERS1305867

100

100

1