Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   PTC86_RS11015 Genome accession   NZ_CP117764
Coordinates   2323170..2323910 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain 2022CK-00784     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2318170..2328910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTC86_RS10995 (PTC86_10995) aroB 2318707..2319789 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  PTC86_RS11000 (PTC86_11000) aroK 2319818..2320387 (-) 570 WP_000643712.1 shikimate kinase AroK -
  PTC86_RS11005 (PTC86_11005) pilQ 2320399..2322564 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  PTC86_RS11010 (PTC86_11010) pilP 2322632..2323159 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  PTC86_RS11015 (PTC86_11015) pilO 2323170..2323910 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  PTC86_RS11020 (PTC86_11020) pilN 2323907..2324548 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  PTC86_RS11025 (PTC86_11025) pilM 2324548..2325606 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  PTC86_RS11030 (PTC86_11030) ponA 2325769..2328324 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=787543 PTC86_RS11015 WP_000076101.1 2323170..2323910(-) (pilO) [Acinetobacter baumannii strain 2022CK-00784]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=787543 PTC86_RS11015 WP_000076101.1 2323170..2323910(-) (pilO) [Acinetobacter baumannii strain 2022CK-00784]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGCATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683