Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   PTC86_RS11010 Genome accession   NZ_CP117764
Coordinates   2322632..2323159 (-) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain 2022CK-00784     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2317632..2328159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTC86_RS10990 (PTC86_10990) - 2317816..2318691 (-) 876 WP_000218802.1 hypothetical protein -
  PTC86_RS10995 (PTC86_10995) aroB 2318707..2319789 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  PTC86_RS11000 (PTC86_11000) aroK 2319818..2320387 (-) 570 WP_000643712.1 shikimate kinase AroK -
  PTC86_RS11005 (PTC86_11005) pilQ 2320399..2322564 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  PTC86_RS11010 (PTC86_11010) pilP 2322632..2323159 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  PTC86_RS11015 (PTC86_11015) pilO 2323170..2323910 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  PTC86_RS11020 (PTC86_11020) pilN 2323907..2324548 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  PTC86_RS11025 (PTC86_11025) pilM 2324548..2325606 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=787542 PTC86_RS11010 WP_000695065.1 2322632..2323159(-) (pilP) [Acinetobacter baumannii strain 2022CK-00784]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=787542 PTC86_RS11010 WP_000695065.1 2322632..2323159(-) (pilP) [Acinetobacter baumannii strain 2022CK-00784]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714