Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   OG328_RS13435 Genome accession   NZ_CP130730
Coordinates   3005340..3007478 (-) Length   712 a.a.
NCBI ID   WP_393752988.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01518     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3000340..3012478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG328_RS13415 (OG328_13395) - 3000849..3001163 (-) 315 WP_405838901.1 hypothetical protein -
  OG328_RS13420 (OG328_13400) - 3001292..3002293 (-) 1002 WP_106971112.1 TerC/Alx family metal homeostasis membrane protein -
  OG328_RS13425 (OG328_13405) - 3002528..3004552 (-) 2025 WP_405838904.1 TerD family protein -
  OG328_RS13430 (OG328_13410) - 3004603..3005181 (-) 579 WP_033283094.1 TerD family protein -
  OG328_RS13435 (OG328_13415) uvrB 3005340..3007478 (-) 2139 WP_393752988.1 excinuclease ABC subunit UvrB Machinery gene
  OG328_RS13440 (OG328_13420) - 3007519..3008382 (-) 864 WP_405838906.1 MHYT domain-containing protein -
  OG328_RS13445 (OG328_13425) - 3008661..3009536 (+) 876 WP_405838908.1 glycerophosphodiester phosphodiesterase -
  OG328_RS13450 (OG328_13430) - 3009582..3010136 (+) 555 WP_033283090.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  OG328_RS13455 (OG328_13435) - 3010229..3011539 (+) 1311 WP_405838910.1 MFS transporter -

Sequence

Protein


Download         Length: 712 a.a.        Molecular weight: 80166.95 Da        Isoelectric Point: 4.9676

>NTDB_id=787522 OG328_RS13435 WP_393752988.1 3005340..3007478(-) (uvrB) [Streptomyces sp. NBC_01518]
MRPVSHIERTVAPFEVVSPYQPSGDQPAAIAELARRVEAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSVNEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTP
QEYVDRMVPLKVGDEIDRDQLLRRFVDIQYTRNDVAFSRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EIISEDEHLYVFPASHYIAGPERMERAVNDIEKELAERLAEMEKQGKLLEAQRLRMRTTYDLEMLRQIGSCSGVENYSMH
FDGREPGSAPNTLIDYFPEDFLLVIDESHNTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQKRIGQTVYL
SATPGKYELSRADGAVEQIIRPTGLIDPEVVVKPTEGQIDDLVHEIRKRTEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRIELLRELRSGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADRITPAMEKAIEETNRRREKQVAYNTERGIDPQPLRKKINDIVAQIAREDVDTEQLLGSGYRKAKDGKGAKTPVPALGG
KAAKSAKSAKGKAQDTVPTDRPAAELAEQIEEMTARMRAAAADLQFEVAARLRDEVHEMKKELRQMKEGGLA

Nucleotide


Download         Length: 2139 bp        

>NTDB_id=787522 OG328_RS13435 WP_393752988.1 3005340..3007478(-) (uvrB) [Streptomyces sp. NBC_01518]
ATGCGGCCCGTTTCCCACATCGAACGCACGGTGGCGCCTTTCGAGGTCGTCAGCCCCTACCAGCCCAGCGGCGACCAGCC
GGCGGCCATCGCCGAGCTGGCCCGACGCGTCGAGGCAGGTGAGAAGGACGTCGTCCTGCTGGGCGCGACCGGCACCGGCA
AGTCCGCCACCACCGCGTGGATGATCGAGAAGCTCCAGCGCCCCACCCTGGTGATGGCGCCGAACAAGACCCTGGCCGCC
CAGCTGGCCAACGAGTTCCGCGAGCTCCTGCCGAACAACGCGGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCCTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGGTCAACGAGGAGGTCGAGCGCCTGCGCCACT
CCGCGACCAACTCGCTGCTCACCCGCCGCGACGTCATCGTGGTCGCCTCGGTCTCCTGCATCTACGGCCTCGGTACTCCG
CAGGAGTACGTGGACCGCATGGTCCCCCTCAAGGTCGGCGACGAGATCGACCGCGACCAGCTGCTGCGCCGCTTCGTGGA
CATCCAGTACACGCGCAACGACGTGGCCTTCAGCCGCGGCACCTTCCGCGTCCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAAGAGCTGGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCCCTCTCCACCCTCCACCCGCTCACCGGC
GAGATCATCAGCGAGGACGAGCACCTCTACGTGTTCCCAGCCTCCCACTACATCGCCGGCCCCGAGCGCATGGAGCGGGC
CGTCAACGACATCGAGAAGGAACTCGCCGAGCGGCTGGCCGAGATGGAGAAGCAGGGCAAGCTCCTGGAGGCCCAGCGCC
TGCGCATGCGGACCACGTACGACCTGGAGATGCTCCGCCAGATCGGCTCCTGCTCCGGCGTCGAGAACTACTCGATGCAC
TTCGACGGCCGCGAGCCCGGCTCCGCGCCGAACACCCTGATCGACTACTTCCCGGAAGACTTCCTGCTCGTCATCGACGA
GTCGCACAACACGGTCCCGCAGATCGGCGCCATGTACGAGGGCGACGCCTCCCGCAAGCGCACCCTCGTCGACCACGGCT
TCCGGCTGCCCTCCGCCCTGGACAACCGCCCCCTGAAGTGGGAGGAGTTCCAGAAGCGCATCGGACAGACGGTCTACCTC
TCGGCGACCCCGGGCAAGTACGAGCTCTCGCGCGCGGACGGCGCCGTCGAGCAGATCATCCGCCCCACCGGACTCATCGA
CCCCGAGGTCGTCGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGCAAGCGCACCGAGAAGGACG
AGCGGGTCCTGGTCACCACGCTCACCAAGAAGATGGCCGAGGACCTCACGGACTACTTCCTGGAACTCGGCATCCAGGTC
CGCTACCTGCACAGCGACGTCGACACCCTGCGCCGCATCGAGCTGCTGCGCGAGCTGCGCTCCGGCGAGTTCGACGTCCT
GGTCGGCATCAACCTCCTCCGGGAGGGCCTCGACCTCCCGGAGGTGTCCCTGGTCGCCATCCTGGACGCCGACAAGGAGG
GCTTCCTGCGCTCCGGCACCTCGCTGATCCAGACCATCGGCCGCGCGGCGCGCAACGTCTCCGGCCAGGTCCACATGTAC
GCCGACCGGATCACCCCGGCGATGGAGAAGGCCATCGAGGAGACCAACCGCCGCCGGGAGAAGCAGGTCGCGTACAACAC
GGAGCGCGGCATCGACCCCCAGCCGCTCCGCAAGAAGATCAACGACATCGTCGCGCAGATCGCCCGCGAGGACGTCGACA
CGGAGCAGCTGCTCGGCTCGGGCTACCGCAAGGCCAAGGACGGCAAGGGCGCCAAGACCCCCGTGCCCGCCCTCGGCGGC
AAGGCCGCGAAGAGCGCCAAGTCCGCCAAGGGCAAGGCCCAGGACACGGTGCCGACCGACCGTCCCGCGGCCGAACTTGC
CGAGCAGATCGAGGAGATGACGGCACGCATGCGTGCCGCCGCCGCGGACCTGCAGTTCGAGGTCGCGGCCCGGCTGCGTG
ACGAGGTCCACGAGATGAAGAAGGAACTGCGCCAGATGAAGGAGGGCGGCCTGGCCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(440-551)

UvrB interaction domain (UvrB_inter)

(169-257)

Ultra-violet resistance protein B (UvrB)

(559-600)

UvrB/uvrC motif (UVR)

(668-701)

Type III restriction enzyme, res subunit (ResIII)

(25-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.734

98.034

0.556
  uvrB Streptococcus pneumoniae R6

56.734

98.034

0.556
  uvrB Streptococcus pneumoniae D39

56.734

98.034

0.556