Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   OG382_RS29475 Genome accession   NZ_CP130722
Coordinates   6471008..6473143 (+) Length   711 a.a.
NCBI ID   WP_266745546.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01238     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6466008..6478143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG382_RS29450 (OG382_29485) - 6466362..6466724 (+) 363 WP_266745551.1 cupin domain-containing protein -
  OG382_RS29455 (OG382_29490) - 6466738..6468120 (-) 1383 WP_266745550.1 MFS transporter -
  OG382_RS29460 (OG382_29495) - 6468238..6468780 (-) 543 WP_266745549.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  OG382_RS29465 (OG382_29500) - 6468883..6469830 (-) 948 WP_266745548.1 glycerophosphodiester phosphodiesterase family protein -
  OG382_RS29470 (OG382_29505) - 6470045..6470944 (+) 900 WP_266745547.1 MHYT domain-containing protein -
  OG382_RS29475 (OG382_29510) uvrB 6471008..6473143 (+) 2136 WP_266745546.1 excinuclease ABC subunit UvrB Machinery gene
  OG382_RS29480 (OG382_29515) - 6473276..6473854 (+) 579 WP_073747806.1 TerD family protein -
  OG382_RS29485 (OG382_29520) - 6474048..6475988 (+) 1941 WP_327349946.1 TerD family protein -
  OG382_RS29490 (OG382_29525) - 6476253..6477257 (+) 1005 WP_266745544.1 TerC family protein -
  OG382_RS29495 (OG382_29530) - 6477378..6477536 (-) 159 Protein_5821 MBL fold metallo-hydrolase -
  OG382_RS29500 (OG382_29535) - 6477590..6477811 (+) 222 WP_266745543.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 711 a.a.        Molecular weight: 79716.56 Da        Isoelectric Point: 4.9447

>NTDB_id=787378 OG382_RS29475 WP_266745546.1 6471008..6473143(+) (uvrB) [Streptomyces sp. NBC_01238]
MRPVSKIERSVAPFEVVSPYQPSGDQPAAIAELERRIRADEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTP
QEYVDRMVQLKVGDEIDRDQLLRRFVEIQYSRNDLAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVISEDQSLHVFPASHYVAGPERMEKAVNGIEQELEQRLAELEKQGKMLEAQRLRMRTTYDIEMLRQIGTCSGVENYSMH
FDGRSPGTAPNTLLDYFPEDFLLVLDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFLGRINQTVYL
SATPGKYELSRGDGFVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRTRAEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRIELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMAQAIDETNRRREKQIAYNTERGLDPQPLRKKINDIVATIAREEVDTEQLLGSGYRQAKGAKAPVPTLGVKTA
GAKTAGAKKAGGKGAVVTDRPAAELAGIIEEMTDRMRAAAADLQFEVAARLRDEVGELKKELRQMREAGLA

Nucleotide


Download         Length: 2136 bp        

>NTDB_id=787378 OG382_RS29475 WP_266745546.1 6471008..6473143(+) (uvrB) [Streptomyces sp. NBC_01238]
ATGCGGCCCGTTTCGAAGATCGAACGTTCGGTGGCGCCTTTCGAGGTCGTCAGTCCCTACCAGCCCAGCGGCGACCAGCC
CGCGGCCATCGCCGAGCTGGAGCGTCGCATCCGTGCGGATGAGAAGGACGTCGTCCTGCTCGGTGCGACCGGCACCGGCA
AGTCGGCGACCACCGCCTGGATGATCGAGAAGCTGCAGCGCCCCACCCTCGTCATGGCGCCGAACAAAACGCTCGCGGCC
CAGCTGGCGAACGAGTTCCGCGAGCTGCTGCCCAACAACGCCGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTCGAACGGCTGCGCCACT
CCGCGACGAATTCGCTGCTCACCCGGCGCGACGTCATCGTGGTCGCCTCCGTCTCCTGCATCTACGGCCTCGGTACGCCC
CAGGAGTACGTGGACCGGATGGTCCAGCTCAAGGTCGGTGACGAGATCGACCGCGACCAGCTGCTGCGCCGCTTCGTCGA
GATCCAGTACAGCCGCAACGACCTCGCGTTCACCCGCGGCACGTTCCGGGTCCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTCGCCGTCCGCATCGAGATGTTCGGTGACGAGATCGAGGCGCTCTCCACCCTCCACCCGCTCACCGGC
GAGGTCATCAGCGAGGACCAGTCCCTCCACGTCTTCCCCGCCAGCCACTACGTCGCCGGCCCCGAGCGCATGGAGAAGGC
GGTCAACGGCATCGAGCAGGAGCTGGAGCAGCGCCTCGCCGAGCTGGAGAAGCAGGGCAAGATGCTGGAGGCCCAGCGGC
TGCGGATGCGCACCACGTACGACATCGAGATGCTCCGGCAGATCGGCACCTGCTCCGGCGTGGAGAACTACTCGATGCAC
TTCGACGGCCGCTCACCCGGCACCGCCCCCAACACCCTCCTCGACTACTTCCCCGAGGACTTCCTCCTCGTCCTCGACGA
GTCGCATGTCACCGTCCCGCAGATCGGCGCCATGTACGAGGGCGACGCCTCCCGTAAGCGGACCCTCGTCGACCACGGCT
TCCGGCTCCCCTCCGCGCTCGACAACCGCCCGCTGAAGTGGGAGGAGTTCCTGGGCCGGATCAACCAGACCGTCTATCTT
TCCGCCACGCCCGGAAAGTACGAGCTGTCCAGGGGGGACGGCTTCGTGGAGCAGATCATCCGCCCCACCGGCCTCGTCGA
CCCGGAAGTCGTCGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGCACGCGCGCCGAGAAGGACG
AGCGGGTTCTCGTCACCACCCTCACCAAGAAGATGGCCGAGGACCTCACCGACTACTTCCTGGAGCTCGGCATCCAGGTC
CGCTATCTGCACAGCGACGTCGACACCCTGCGCCGCATCGAGCTGCTGCGCGAGCTGCGCTCCGGCGAGTACGACGTACT
GGTCGGCATCAACCTCCTGCGCGAGGGCCTCGACCTGCCCGAGGTGTCGCTCGTCGCCATCCTCGACGCGGACAAGCAGG
GCTTCCTCCGCTCGGGGACGTCCCTGATCCAGACCATCGGGCGCGCCGCCCGTAACGTCTCGGGACAGGTCCACATGTAC
GCCGACAAGATCACCCCGGCGATGGCGCAGGCCATCGACGAGACGAACCGCCGCCGCGAGAAGCAGATCGCCTACAACAC
CGAGCGTGGCCTCGACCCGCAACCGCTGCGCAAGAAGATCAACGACATCGTCGCCACGATCGCCCGGGAGGAGGTCGACA
CCGAGCAGCTGCTCGGCAGCGGCTACCGCCAGGCGAAGGGTGCCAAGGCCCCCGTTCCCACGCTGGGCGTCAAGACGGCA
GGCGCGAAGACGGCCGGCGCCAAGAAGGCCGGAGGCAAGGGCGCGGTGGTCACCGACCGGCCCGCGGCCGAACTCGCCGG
AATCATCGAGGAGATGACCGACCGGATGCGGGCGGCCGCCGCGGACCTGCAGTTCGAGGTGGCGGCCCGACTGCGCGACG
AGGTCGGTGAGTTGAAGAAGGAGTTGCGCCAGATGAGGGAGGCGGGTCTCGCCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(442-551)

Type III restriction enzyme, res subunit (ResIII)

(25-145)

UvrB/uvrC motif (UVR)

(669-701)

UvrB interaction domain (UvrB_inter)

(168-257)

Ultra-violet resistance protein B (UvrB)

(559-600)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.957

97.046

0.553
  uvrB Streptococcus pneumoniae R6

56.957

97.046

0.553
  uvrB Streptococcus pneumoniae D39

56.957

97.046

0.553