Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   OG299_RS29075 Genome accession   NZ_CP130720
Coordinates   6382446..6384614 (+) Length   722 a.a.
NCBI ID   WP_327363076.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01296     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6377446..6389614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG299_RS29045 (OG299_29070) - 6377521..6378447 (-) 927 WP_327363073.1 pseudouridine-5'-phosphate glycosidase -
  OG299_RS29050 (OG299_29075) - 6378515..6378727 (+) 213 WP_327363074.1 hypothetical protein -
  OG299_RS29055 (OG299_29080) - 6378833..6379195 (+) 363 WP_266630352.1 cupin domain-containing protein -
  OG299_RS29060 (OG299_29085) - 6379185..6380471 (-) 1287 WP_266630353.1 MFS transporter -
  OG299_RS29065 (OG299_29090) - 6380658..6381230 (-) 573 WP_327363075.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  OG299_RS29070 (OG299_29095) - 6381263..6382201 (-) 939 WP_266630357.1 glycerophosphodiester phosphodiesterase family protein -
  OG299_RS29075 (OG299_29100) uvrB 6382446..6384614 (+) 2169 WP_327363076.1 excinuclease ABC subunit UvrB Machinery gene
  OG299_RS29080 (OG299_29105) - 6384700..6385278 (+) 579 WP_030292185.1 TerD family protein -
  OG299_RS29085 (OG299_29110) - 6385366..6387387 (+) 2022 WP_327363077.1 TerD family protein -
  OG299_RS29090 (OG299_29115) - 6387607..6388590 (+) 984 WP_266630361.1 TerC/Alx family metal homeostasis membrane protein -

Sequence

Protein


Download         Length: 722 a.a.        Molecular weight: 80793.97 Da        Isoelectric Point: 4.8934

>NTDB_id=787296 OG299_RS29075 WP_327363076.1 6382446..6384614(+) (uvrB) [Streptomyces sp. NBC_01296]
MRPVSKIERTVAPFEVLSPYQPSGDQPAAIAELEKRIRAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTP
QEYVDRMVPLKVGEEMDRDQLLRRFVDIQYTRNDVAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVISEDRELYVFPASHYVAGPERMEKAVAGIEKELAERLAELEKQGKMLEAQRLRMRTTYDLEMMRQIGSCSGIENYSLH
MDDRERGSAPNTLIDYFPEDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYL
SATPGKYELSRGDGFVEQIIRPTGLIDPEVVVKPTEGQIDDLVHEIRQRVEKDERVLVATLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSGTSLIQTIGRAARNVSGQVHMY
ADSITPAMAQAIDETNRRREKQVAYNTANGIDPQPLRKKINDIVATIAREELDTEELLGTGYRQGKDGKGAKAPVPSLGV
VKAGQVTVGGKGVKGAKAAKAAKAAASLTDRPAEELAALIEQMTERMRGAAAELQFEVAARIRDEVGELKKELRQMKEAG
LA

Nucleotide


Download         Length: 2169 bp        

>NTDB_id=787296 OG299_RS29075 WP_327363076.1 6382446..6384614(+) (uvrB) [Streptomyces sp. NBC_01296]
ATGCGGCCCGTATCGAAGATCGAACGCACGGTGGCGCCTTTCGAGGTGCTCAGCCCCTACCAGCCCAGCGGCGACCAGCC
GGCGGCCATCGCCGAGCTGGAAAAGCGCATCCGTGCAGGTGAGAAGGATGTCGTCCTGCTGGGTGCGACCGGCACCGGCA
AGTCGGCGACCACCGCCTGGATGATCGAGAAGCTCCAGCGCCCGACCCTCGTGATGGCGCCGAACAAGACCCTCGCCGCC
CAGCTGGCGAACGAGTTCCGCGAGCTCCTGCCGAACAACGCCGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTTCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTGGAGCGGCTGCGCCACT
CCGCGACCAACTCGCTGCTCACCCGGCGCGACGTGATCGTCGTGGCGTCCGTGTCCTGTATCTACGGCCTCGGCACCCCG
CAGGAGTACGTCGACCGGATGGTCCCCCTCAAGGTCGGCGAGGAGATGGACCGGGACCAGCTGCTGCGCCGCTTCGTCGA
CATCCAGTACACGCGCAACGACGTGGCCTTCACCCGCGGCACCTTCCGCGTGCGCGGGGACACCATCGAGATCTTCCCGG
TCTACGAGGAACTGGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCCCTGTCCACCCTGCACCCGCTGACCGGC
GAGGTCATCAGCGAGGACCGCGAGCTGTACGTCTTCCCCGCCAGCCACTACGTCGCCGGCCCCGAGCGCATGGAGAAGGC
GGTCGCCGGCATCGAGAAGGAGCTCGCGGAGCGCCTCGCCGAGCTGGAGAAGCAGGGCAAGATGCTGGAGGCGCAGCGGC
TGCGCATGCGCACCACGTACGACCTGGAGATGATGCGCCAGATCGGGTCCTGCTCCGGCATCGAGAACTACTCGCTGCAC
ATGGACGACCGCGAGCGCGGCTCCGCGCCCAACACCCTCATCGACTACTTCCCCGAGGACTTCCTCCTCGTCATCGACGA
GTCGCACGTCACGGTGCCGCAGATCGGTGCGATGTACGAGGGCGACGCCTCGCGCAAGCGGACCCTGGTCGACCACGGCT
TCCGGCTGCCCTCCGCCCTCGACAACCGGCCGCTGAAGTGGGAGGAGTTCCAGGAGCGGATCGGCCAGACGGTCTACCTG
TCGGCGACCCCGGGCAAGTACGAGCTCTCCCGCGGCGACGGCTTCGTCGAGCAGATCATCCGCCCCACCGGGCTCATCGA
CCCCGAGGTCGTGGTCAAGCCCACCGAGGGGCAGATCGACGACCTGGTCCACGAGATCCGGCAGCGGGTGGAGAAGGACG
AGCGCGTCCTGGTCGCCACCCTCACCAAGAAGATGGCCGAGGACCTCACGGACTACTTCCTGGAGCTCGGCATCCAGGTC
CGCTACCTGCACAGCGACGTCGACACCCTGCGCCGCATCGAGCTGCTGCGCGAGCTGCGCGCTGGCGAGTACGACGTCCT
GGTCGGCATCAACCTGCTGCGCGAGGGCCTCGACCTGCCCGAGGTGTCGCTGGTGGCGATCCTCGACGCCGACAAGCAGG
GCTTCCTGCGCTCGGGGACCTCCCTGATCCAGACCATCGGCCGCGCGGCGCGCAACGTGTCGGGCCAGGTCCACATGTAC
GCGGACAGCATCACCCCGGCGATGGCGCAGGCGATCGACGAGACCAACCGCCGCCGGGAGAAGCAGGTCGCCTACAACAC
GGCGAACGGGATCGACCCGCAGCCGCTGCGCAAGAAGATCAACGACATCGTCGCCACCATCGCCCGCGAGGAACTGGACA
CCGAGGAGCTCCTCGGCACCGGGTACCGCCAGGGGAAGGACGGCAAGGGCGCCAAGGCGCCCGTGCCTTCGCTCGGCGTG
GTCAAGGCGGGCCAGGTCACCGTGGGCGGCAAGGGGGTCAAGGGAGCCAAGGCGGCCAAGGCGGCCAAGGCGGCCGCGTC
GCTGACGGACCGTCCGGCCGAGGAACTGGCCGCGCTCATCGAGCAGATGACGGAGCGGATGCGGGGAGCGGCGGCCGAGC
TCCAGTTCGAGGTCGCGGCCCGGATCCGGGACGAGGTGGGCGAGCTGAAGAAGGAGCTGCGGCAGATGAAGGAAGCGGGC
CTCGCCTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(679-712)

UvrB interaction domain (UvrB_inter)

(169-257)

Ultra-violet resistance protein B (UvrB)

(559-600)

Helicase conserved C-terminal domain (Helicase_C)

(442-551)

Type III restriction enzyme, res subunit (ResIII)

(25-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.874

96.676

0.54
  uvrB Streptococcus pneumoniae R6

55.874

96.676

0.54
  uvrB Streptococcus pneumoniae D39

55.874

96.676

0.54