Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   OG736_RS12080 Genome accession   NZ_CP130718
Coordinates   2658470..2660614 (-) Length   714 a.a.
NCBI ID   WP_327182435.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01334     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2653470..2665614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG736_RS12060 (OG736_12045) - 2653997..2654311 (-) 315 WP_327182432.1 hypothetical protein -
  OG736_RS12065 (OG736_12050) - 2654437..2655438 (-) 1002 WP_327182433.1 TerC family protein -
  OG736_RS12070 (OG736_12055) - 2655664..2657676 (-) 2013 WP_327182434.1 TerD family protein -
  OG736_RS12075 (OG736_12060) - 2657731..2658309 (-) 579 WP_057599421.1 TerD family protein -
  OG736_RS12080 (OG736_12065) uvrB 2658470..2660614 (-) 2145 WP_327182435.1 excinuclease ABC subunit UvrB Machinery gene
  OG736_RS12085 (OG736_12070) - 2660702..2661565 (-) 864 WP_327182436.1 MHYT domain-containing protein -
  OG736_RS12090 (OG736_12075) - 2661849..2662721 (+) 873 WP_327182437.1 glycerophosphodiester phosphodiesterase family protein -
  OG736_RS12095 (OG736_12080) - 2662804..2663358 (+) 555 WP_327182438.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  OG736_RS12100 (OG736_12085) - 2663427..2664767 (+) 1341 WP_327182439.1 MFS transporter -
  OG736_RS12105 (OG736_12090) - 2664833..2665261 (-) 429 WP_054242977.1 VOC family protein -

Sequence

Protein


Download         Length: 714 a.a.        Molecular weight: 80367.97 Da        Isoelectric Point: 4.8618

>NTDB_id=787162 OG736_RS12080 WP_327182435.1 2658470..2660614(-) (uvrB) [Streptomyces sp. NBC_01334]
MRPVSHIERTVAPFEVVSPYQPSGDQPAAIAELAKRVEAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLRVGDELDRDQLLRRFVDIQYTRNDLAFSRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EIISDDQQLYIFPATHYVAGPERLERAANDIEKELGERLAELEKQGKLLEAQRLRMRTTYDLEMLRQIGSCSGVENYSMH
FDGRSPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYL
SATPGKYELSRGDGTVEQIIRPTGLIDPEVVVKPTEGQIDDLVHEIRTRVEKDERVLVTTLTKKMAEDLTDYFLELGIHV
RYLHSDVDTLRRIELLRELRAGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPGMERAIEETNRRREKQVAYNTANGIDPQPLRKKINDIVAQISREEVDTEQLLGSGYRAKKDGRGTKAPVPSLGD
KAAKGAKSRSAKGRSEETVPTDRPAAELAEQIEEMTQRMRAAAADLQFEVAARIRDEVSEMKKELRQMREAGLA

Nucleotide


Download         Length: 2145 bp        

>NTDB_id=787162 OG736_RS12080 WP_327182435.1 2658470..2660614(-) (uvrB) [Streptomyces sp. NBC_01334]
ATGCGGCCCGTTTCCCACATCGAACGCACGGTGGCGCCTTTCGAGGTCGTCAGTCCCTACCAGCCCAGCGGCGACCAGCC
GGCGGCCATCGCCGAGCTGGCCAAGCGCGTCGAGGCAGGTGAGAAGGACGTCGTCCTGCTCGGCGCGACCGGCACCGGAA
AGTCCGCGACCACCGCGTGGATGATCGAGAAGCTCCAGCGCCCCACCCTGGTGATGGCGCCGAACAAGACCCTGGCCGCC
CAGCTGGCGAACGAGTTCCGCGAACTGCTGCCGAACAACGCGGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTCGAGCGCCTGCGCCACT
CCGCGACCAACTCGCTGCTCACCCGCCGTGACGTCGTCGTGGTCGCCTCGGTCTCCTGCATCTACGGCCTCGGCACCCCG
CAGGAGTACGTGGACCGCATGGTCCCGCTCCGCGTCGGCGACGAGCTCGACCGGGACCAGCTGTTGCGCCGCTTCGTCGA
CATCCAGTACACGCGCAACGACCTGGCGTTCAGCCGCGGCACCTTCCGGGTGCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTCGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCCCTGTCCACCCTGCACCCGCTCACCGGC
GAGATCATCAGCGACGACCAGCAGCTGTACATCTTCCCGGCCACGCACTACGTGGCGGGCCCCGAACGCCTGGAGCGGGC
CGCCAACGACATCGAGAAGGAGCTGGGCGAGCGCCTGGCCGAGCTGGAGAAGCAGGGCAAGCTCCTGGAGGCCCAGCGGC
TGCGCATGCGCACCACGTACGACCTGGAGATGCTCCGCCAGATCGGCTCCTGCTCCGGCGTCGAGAACTACTCGATGCAC
TTCGACGGCCGCTCGCCGGGCTCCCCGCCGAACACCCTGCTCGACTACTTCCCGGACGACTTCCTGCTCGTCATCGACGA
GTCCCATGTCACCGTCCCGCAGATCGGCGCCATGTACGAGGGGGACGCCTCCCGCAAGCGCACCCTCGTCGACCACGGCT
TCCGGCTGCCCTCCGCCCTGGACAACCGCCCGCTGAAGTGGGAGGAGTTCCAGGAGCGCATCGGGCAGACCGTCTACCTG
TCGGCGACCCCCGGCAAGTACGAGCTCTCCCGCGGGGACGGCACCGTCGAGCAGATCATCCGCCCCACCGGCCTGATCGA
CCCGGAGGTCGTCGTCAAGCCGACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGCACGCGCGTGGAGAAGGACG
AGCGCGTCCTGGTCACCACGCTCACCAAGAAGATGGCCGAGGACCTCACGGACTACTTCCTGGAGCTCGGCATCCACGTG
CGCTACCTGCACAGTGACGTCGACACGCTGCGCCGGATCGAGCTGCTGCGTGAGCTGCGCGCCGGCGAGTTCGACGTCCT
GGTCGGCATCAACCTCCTGCGGGAGGGTCTCGACCTGCCCGAGGTGTCCCTGGTGGCGATCCTCGACGCCGACAAGGAGG
GCTTCCTGCGCTCCGGCACCTCGCTGATCCAGACCATCGGCCGCGCGGCGCGCAACGTCTCCGGCCAGGTCCACATGTAC
GCCGACAAGATCACCCCGGGCATGGAACGGGCCATCGAGGAGACCAACCGCCGCCGGGAGAAGCAGGTCGCCTACAACAC
GGCGAACGGCATCGACCCGCAGCCGCTCCGCAAGAAGATCAACGACATCGTCGCCCAGATCTCCCGCGAGGAGGTCGACA
CGGAGCAGCTGCTCGGCTCGGGCTACCGCGCGAAGAAGGACGGGCGGGGAACCAAGGCCCCGGTGCCCTCCCTCGGAGAC
AAGGCGGCCAAGGGCGCCAAGTCCAGGTCGGCCAAGGGCAGGTCCGAGGAGACGGTGCCGACGGACCGCCCCGCGGCCGA
ACTCGCCGAGCAGATCGAGGAGATGACGCAGCGCATGCGGGCCGCCGCCGCCGACCTCCAGTTCGAGGTCGCCGCCCGGA
TCCGTGACGAGGTCTCCGAAATGAAGAAGGAACTTCGCCAGATGAGGGAGGCGGGTCTGGCCTGA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-134)

Helicase conserved C-terminal domain (Helicase_C)

(442-551)

UvrB interaction domain (UvrB_inter)

(169-257)

Ultra-violet resistance protein B (UvrB)

(559-600)

UvrB/uvrC motif (UVR)

(670-703)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.571

98.039

0.564
  uvrB Streptococcus pneumoniae R6

57.571

98.039

0.564
  uvrB Streptococcus pneumoniae D39

57.571

98.039

0.564