Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   OG472_RS13695 Genome accession   NZ_CP130715
Coordinates   2867300..2869456 (-) Length   718 a.a.
NCBI ID   WP_401600928.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00207     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2862300..2874456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG472_RS13680 (OG472_13610) - 2863363..2864346 (-) 984 WP_405941473.1 TerC/Alx family metal homeostasis membrane protein -
  OG472_RS13685 (OG472_13615) - 2864585..2866576 (-) 1992 WP_405941474.1 TerD family protein -
  OG472_RS13690 (OG472_13620) - 2866633..2867211 (-) 579 WP_030720460.1 TerD family protein -
  OG472_RS13695 (OG472_13625) uvrB 2867300..2869456 (-) 2157 WP_401600928.1 excinuclease ABC subunit UvrB Machinery gene
  OG472_RS13700 (OG472_13630) - 2869690..2870598 (+) 909 WP_405941475.1 glycerophosphodiester phosphodiesterase -
  OG472_RS13705 (OG472_13635) - 2870686..2871249 (+) 564 WP_383569154.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  OG472_RS13710 (OG472_13640) - 2871406..2872701 (+) 1296 WP_401600934.1 MFS transporter -
  OG472_RS13715 (OG472_13645) - 2872725..2873093 (-) 369 WP_405941476.1 cupin domain-containing protein -
  OG472_RS13720 (OG472_13650) - 2873160..2873945 (-) 786 WP_405941477.1 methyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 718 a.a.        Molecular weight: 80632.63 Da        Isoelectric Point: 4.8412

>NTDB_id=786987 OG472_RS13695 WP_401600928.1 2867300..2869456(-) (uvrB) [Streptomyces sp. NBC_00207]
MRPVSKIERTVAPFEVVSPYQPSGDQPTAIADLERRIRAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTP
QEYVDRMVSLKVGEEIDRDQLLRRFVDIQYTRNDVAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVISEDRELYVFPASHYVAGPERMEKAITGIEAELAERLAELEKQGKMLEAQRLRMRTTYDLEMMRQIGSCSGIENYSLH
MDDRERGSAPNTLIDYFPEDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYL
SATPGKYELSRGDGFVEQIIRPTGLIDPEVVVKPTEGQIDDLVHEIRQRVEKDERILVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKMTPAMEKAIDETNRRREKQIAYNTANGIDPQPLRKKINDIVATIAREELDTEELLGTGYRQAKDGKGAKAPVPALGG
RAAQTKAGGKGAKGAKAAKGAEVLTDRPAEELASLIEQMTERMRGAAAELQFEVAARIRDEVGELKKELRQMKEAGLA

Nucleotide


Download         Length: 2157 bp        

>NTDB_id=786987 OG472_RS13695 WP_401600928.1 2867300..2869456(-) (uvrB) [Streptomyces sp. NBC_00207]
ATGCGGCCCGTATCGAAGATCGAACGCACGGTGGCGCCTTTCGAGGTCGTCAGCCCCTACCAGCCCAGCGGCGACCAGCC
GACGGCCATCGCCGACCTGGAGAGGCGTATCCGTGCAGGTGAGAAGGATGTCGTCCTGCTGGGTGCGACCGGCACCGGCA
AGTCGGCGACCACCGCCTGGATGATCGAGAAGCTTCAGCGCCCCACCCTCGTCATGGCGCCGAACAAGACGCTCGCCGCC
CAGCTGGCGAACGAGTTCCGCGAGCTCCTGCCGAACAACGCCGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTACCGCAGTCGGACACGTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTGGAGCGGCTGCGCCACT
CCGCGACCAACTCGCTGCTGACCCGGCGCGACGTGATCGTCGTCGCCTCCGTGTCCTGCATCTACGGCCTCGGCACCCCG
CAGGAGTACGTCGACCGGATGGTCTCCCTCAAGGTCGGCGAGGAGATCGACCGGGACCAGCTGCTGCGCCGCTTCGTCGA
CATCCAGTACACGCGCAACGACGTGGCCTTCACCCGCGGCACCTTCCGGGTGCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAACTGGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCCCTCTCCACCCTCCACCCGCTGACCGGC
GAGGTCATCAGCGAGGACCGCGAGCTGTACGTCTTCCCCGCGAGCCACTACGTCGCCGGCCCCGAGCGCATGGAGAAGGC
GATCACCGGCATCGAGGCCGAGCTGGCCGAGCGCCTCGCCGAGCTGGAGAAGCAGGGCAAGATGCTGGAGGCGCAGCGGC
TGCGCATGCGCACCACGTACGACCTGGAGATGATGCGGCAGATCGGGTCCTGCTCCGGCATCGAGAACTACTCGCTGCAC
ATGGACGACCGCGAGCGCGGCTCCGCCCCGAACACCCTCATCGACTACTTCCCGGAGGACTTCCTCCTGGTCATCGACGA
GTCGCACGTGACCGTGCCGCAGATCGGCGCCATGTACGAGGGCGACGCCTCCCGCAAGCGGACCCTGGTCGACCACGGAT
TCCGGCTGCCGTCGGCCCTCGACAACCGGCCGCTGAAGTGGGAGGAGTTCCAGGAGCGCATCGGCCAGACCGTCTACCTG
TCGGCGACCCCCGGAAAGTACGAGCTCTCGCGCGGCGACGGCTTCGTCGAGCAGATCATCCGCCCCACCGGCCTCATCGA
CCCCGAGGTCGTGGTCAAGCCCACCGAGGGGCAGATCGACGACCTGGTCCACGAGATCCGGCAGCGGGTGGAGAAGGACG
AGCGGATCCTGGTCACCACCCTCACCAAGAAGATGGCCGAGGACCTCACGGACTACTTCCTGGAGCTCGGCATCCAGGTC
CGCTACCTGCACAGCGACGTGGACACCCTGCGCCGCATCGAGCTGCTGCGCGAGCTGCGGGCCGGCGAGTACGACGTCCT
GGTCGGCATCAACCTGCTGCGCGAGGGCCTCGACCTGCCCGAGGTGTCCCTGGTGGCGATCCTCGACGCCGACAAGGAGG
GCTTCCTGCGCTCCGGGACCTCCCTGATCCAGACCATCGGCCGCGCCGCGCGCAACGTCTCGGGCCAGGTCCACATGTAC
GCGGACAAGATGACCCCGGCGATGGAGAAGGCCATCGACGAGACCAACCGGCGCCGGGAGAAGCAGATCGCCTACAACAC
GGCGAACGGGATCGACCCGCAGCCGCTGCGCAAGAAGATCAACGACATCGTCGCCACGATCGCCCGCGAGGAACTCGACA
CCGAGGAGCTCCTCGGCACCGGATACCGGCAGGCGAAGGACGGCAAGGGAGCCAAGGCCCCTGTGCCGGCGCTCGGCGGC
CGGGCCGCCCAGACCAAGGCGGGCGGCAAGGGCGCGAAGGGGGCCAAGGCCGCCAAGGGCGCCGAGGTGCTCACCGACCG
GCCCGCCGAGGAGCTGGCCTCGCTCATCGAGCAGATGACGGAGCGCATGCGCGGGGCGGCCGCGGAGCTGCAGTTCGAGG
TCGCGGCCCGGATCCGGGACGAGGTGGGCGAGCTGAAGAAGGAGTTGCGGCAGATGAAGGAAGCGGGCCTCGCCTGA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(559-600)

Type III restriction enzyme, res subunit (ResIII)

(25-145)

UvrB/uvrC motif (UVR)

(674-708)

Helicase conserved C-terminal domain (Helicase_C)

(441-551)

UvrB interaction domain (UvrB_inter)

(168-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.958

97.075

0.553
  uvrB Streptococcus pneumoniae R6

56.958

97.075

0.553
  uvrB Streptococcus pneumoniae D39

56.958

97.075

0.553