Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PL321_RS19560 Genome accession   NZ_CP117677
Coordinates   511797..511934 (-) Length   45 a.a.
NCBI ID   WP_337961058.1    Uniprot ID   -
Organism   Caloramator sp. mosi_1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 506797..516934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PL321_RS19535 - 507668..508105 (-) 438 WP_337960944.1 anhydro-N-acetylmuramic acid kinase -
  PL321_RS19540 - 508036..508383 (-) 348 WP_337961057.1 anhydro-N-acetylmuramic acid kinase -
  PL321_RS19545 - 508389..508691 (-) 303 WP_337960945.1 anhydro-N-acetylmuramic acid kinase -
  PL321_RS19550 - 508706..508858 (-) 153 WP_337960946.1 anhydro-N-acetylmuramic acid kinase -
  PL321_RS03585 (PL321_03590) - 508879..509118 (-) 240 WP_273963488.1 hypothetical protein -
  PL321_RS03590 (PL321_03595) - 509099..509272 (-) 174 WP_273963489.1 hypothetical protein -
  PL321_RS03595 (PL321_03600) - 509421..509774 (-) 354 WP_273963490.1 BadF/BadG/BcrA/BcrD ATPase family protein -
  PL321_RS03600 (PL321_03605) - 509790..510272 (-) 483 WP_273963492.1 PRD domain-containing protein -
  PL321_RS03605 (PL321_03610) - 510359..510802 (-) 444 WP_273963493.1 hypothetical protein -
  PL321_RS03610 (PL321_03615) - 510814..511077 (-) 264 WP_273964375.1 PRD domain-containing protein -
  PL321_RS03615 (PL321_03620) - 511133..511279 (-) 147 WP_273963494.1 hypothetical protein -
  PL321_RS03620 (PL321_03625) - 511357..511740 (-) 384 WP_337960947.1 hypothetical protein -
  PL321_RS19555 - 511741..511797 (-) 57 Protein_733 hypothetical protein -
  PL321_RS19560 pilR 511797..511934 (-) 138 WP_337961058.1 sigma 54-interacting transcriptional regulator Regulator
  PL321_RS03630 (PL321_03635) - 511880..512098 (-) 219 WP_273963496.1 sigma 54-interacting transcriptional regulator -
  PL321_RS03635 (PL321_03640) - 512086..512394 (-) 309 WP_273963497.1 hypothetical protein -
  PL321_RS03640 (PL321_03645) - 512764..513072 (-) 309 WP_273963498.1 PTS lactose/cellobiose transporter subunit IIA -
  PL321_RS03645 (PL321_03650) - 513251..514576 (-) 1326 WP_273963499.1 PTS sugar transporter subunit IIC -
  PL321_RS03650 (PL321_03655) - 514600..514908 (-) 309 WP_273963500.1 PTS sugar transporter subunit IIB -
  PL321_RS03655 (PL321_03660) - 515054..515563 (-) 510 WP_273963501.1 hypothetical protein -
  PL321_RS03660 (PL321_03665) - 515590..516528 (-) 939 WP_273963502.1 hypothetical protein -

Sequence

Protein


Download         Length: 45 a.a.        Molecular weight: 5126.90 Da        Isoelectric Point: 4.9380

>NTDB_id=786907 PL321_RS19560 WP_337961058.1 511797..511934(-) (pilR) [Caloramator sp. mosi_1]
MWCKKGAYTGATEDKEGIIEKARDGILFLDEVHRLPPEGQEMLLH

Nucleotide


Download         Length: 138 bp        

>NTDB_id=786907 PL321_RS19560 WP_337961058.1 511797..511934(-) (pilR) [Caloramator sp. mosi_1]
ATTTGGTGTAAAAAAGGTGCGTACACAGGAGCCACAGAGGATAAAGAAGGAATAATTGAAAAGGCAAGAGATGGTATTCT
GTTTCTTGATGAAGTGCATAGACTTCCACCAGAGGGACAAGAGATGCTTTTACATTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(4-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

56.098

91.111

0.511
  pilR Pseudomonas aeruginosa PAK

54.762

93.333

0.511
  luxO Vibrio cholerae strain A1552

45

88.889

0.4