Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   OG202_RS12790 Genome accession   NZ_CP130714
Coordinates   2903126..2905255 (-) Length   709 a.a.
NCBI ID   WP_327730253.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00310     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2898126..2910255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG202_RS12775 (OG202_12785) - 2898982..2899983 (-) 1002 WP_326583587.1 TerC/Alx family metal homeostasis membrane protein -
  OG202_RS12780 (OG202_12790) - 2900265..2902328 (-) 2064 WP_326583586.1 TerD family protein -
  OG202_RS12785 (OG202_12795) - 2902376..2902954 (-) 579 WP_037693164.1 TerD family protein -
  OG202_RS12790 (OG202_12800) uvrB 2903126..2905255 (-) 2130 WP_327730253.1 excinuclease ABC subunit UvrB Machinery gene
  OG202_RS12795 (OG202_12805) - 2905296..2906165 (-) 870 WP_326583584.1 MHYT domain-containing protein -
  OG202_RS12800 (OG202_12810) - 2906446..2907315 (+) 870 WP_326583583.1 glycerophosphodiester phosphodiesterase family protein -
  OG202_RS12805 (OG202_12815) - 2907402..2907956 (+) 555 WP_326583582.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  OG202_RS12810 (OG202_12820) - 2908083..2908517 (-) 435 WP_326583581.1 VOC family protein -
  OG202_RS12815 (OG202_12825) - 2908611..2909522 (+) 912 WP_327730252.1 pseudouridine-5'-phosphate glycosidase -

Sequence

Protein


Download         Length: 709 a.a.        Molecular weight: 79890.48 Da        Isoelectric Point: 4.8869

>NTDB_id=786907 OG202_RS12790 WP_327730253.1 2903126..2905255(-) (uvrB) [Streptomyces sp. NBC_00310]
MRPVSKIERTVAPFEVVSPYQPNGDQPTAIAELAQRVGAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLRVGEEFDRDELLRRFVDIQYTRNDMAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EIISDDQQLYVFPASHYVAGPERLERAANDIEKELGERLSELEKQGKLLEAQRLRMRTTYDLEMLRQIGSCSGVENYSMH
FDGREPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERVGQTVYL
SATPGQYELSRSDGHVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRMRTEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMARAIDETNRRREKQVAYNKAHGIDPQPLRKKINDIVARIAREDVDTEQLLGTGYRQGKEGKGAKAPVPSLGG
KAARSAKGKAKETVPTDRPAAELAQQIEEMTERMRAAAADLQFEIAARLRDEVSEMKKELRQMKEAGQA

Nucleotide


Download         Length: 2130 bp        

>NTDB_id=786907 OG202_RS12790 WP_327730253.1 2903126..2905255(-) (uvrB) [Streptomyces sp. NBC_00310]
ATGCGGCCCGTTTCCAAGATCGAACGCACGGTGGCGCCCTTCGAGGTCGTCAGCCCCTACCAGCCGAACGGCGACCAGCC
CACGGCCATAGCCGAGCTCGCCCAGCGCGTCGGAGCAGGTGAGAAGGACGTCGTTTTGCTCGGAGCGACCGGCACCGGCA
AGTCCGCCACCACCGCGTGGATGATCGAGAAGCTCCAGCGCCCCACCCTGGTGATGGCGCCGAACAAGACGCTGGCCGCC
CAGCTGGCCAATGAGTTCCGCGAGCTGCTGCCGAACAACGCGGTCGAATACTTCGTCTCGTACTACGACTACTACCAGCC
AGAGGCCTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTAGAACGCCTGCGCCACT
CCGCGACCAACTCGCTGCTCACCCGCCGCGACGTCGTCGTGGTCGCCTCCGTCTCCTGCATCTACGGCCTCGGCACGCCA
CAGGAGTACGTGGACCGCATGGTCCCCCTCAGGGTCGGCGAGGAGTTCGACCGGGACGAGCTGCTGCGCCGTTTCGTGGA
CATCCAGTACACGCGCAACGACATGGCGTTCACCCGCGGCACGTTCCGCGTCCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTCGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCCCTCTCCACCCTCCACCCCCTCACCGGC
GAGATCATCAGCGACGACCAGCAGCTGTACGTCTTCCCGGCCTCCCACTACGTCGCCGGCCCCGAGCGCCTGGAGCGCGC
CGCCAACGACATCGAGAAGGAGCTGGGGGAGCGCCTGTCGGAGCTGGAGAAACAGGGCAAGCTCCTGGAGGCCCAGCGGC
TGCGCATGCGCACGACGTACGACCTGGAGATGCTCCGCCAGATCGGCTCCTGCTCCGGCGTGGAGAACTACTCGATGCAC
TTCGACGGCCGTGAGCCCGGTTCCCCGCCGAACACCCTGCTGGACTACTTCCCGGACGACTTCCTCCTCGTCATCGACGA
GTCCCATGTCACCGTGCCCCAGATCGGTGCGATGTACGAGGGCGACGCCTCCCGCAAGCGCACCCTCGTCGACCACGGCT
TCCGGCTGCCCTCCGCCCTGGACAACCGCCCCCTGAAGTGGGAGGAGTTCCAGGAGCGCGTCGGCCAGACGGTCTACCTC
TCGGCGACCCCCGGCCAGTACGAACTGTCGCGTTCCGACGGCCACGTCGAGCAGATCATCCGCCCCACCGGCCTGGTCGA
CCCCGAGGTCGTCGTGAAGCCCACCGAGGGCCAGATCGACGATCTGGTGCACGAGATCCGCATGCGCACCGAGAAGGACG
AGCGCGTCCTGGTCACCACCCTCACCAAGAAGATGGCCGAGGACCTCACCGACTACTTCCTGGAACTCGGCATCCAGGTC
CGCTACCTCCACAGCGATGTCGACACCCTGCGCCGCGTCGAACTGCTGCGCGAGCTGCGTGCCGGTGAGTACGACGTCCT
GGTCGGCATCAACCTCCTCAGGGAGGGCCTCGACCTCCCCGAGGTCTCCCTGGTGGCGATCCTCGACGCCGACAAGGAGG
GTTTCCTGCGCTCCGGCACCTCGCTGATCCAGACCATCGGCCGCGCGGCGCGCAACGTGTCGGGTCAGGTCCATATGTAC
GCCGACAAGATCACCCCGGCGATGGCGAGGGCCATCGACGAGACCAACCGGCGCCGGGAGAAGCAGGTCGCGTACAACAA
GGCCCACGGCATCGACCCCCAGCCGCTCCGCAAGAAGATCAACGACATCGTCGCGCGGATCGCCCGGGAGGACGTCGACA
CCGAGCAGTTGCTCGGCACGGGGTACCGCCAGGGGAAGGAGGGCAAGGGTGCCAAGGCCCCGGTCCCCTCCCTCGGCGGC
AAGGCGGCCAGGTCCGCCAAGGGCAAGGCCAAGGAGACCGTCCCGACCGACCGCCCCGCGGCCGAGCTCGCCCAGCAGAT
CGAGGAGATGACGGAGCGCATGCGCGCGGCCGCCGCCGACCTGCAGTTCGAGATCGCCGCCCGGCTGCGTGACGAGGTCT
CCGAGATGAAGAAGGAACTGCGGCAGATGAAGGAGGCGGGCCAGGCCTGA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(169-257)

UvrB/uvrC motif (UVR)

(665-698)

Type III restriction enzyme, res subunit (ResIII)

(22-134)

Ultra-violet resistance protein B (UvrB)

(559-600)

Helicase conserved C-terminal domain (Helicase_C)

(446-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.372

96.615

0.554
  uvrB Streptococcus pneumoniae R6

57.372

96.615

0.554
  uvrB Streptococcus pneumoniae D39

57.372

96.615

0.554