Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PL321_RS00380 Genome accession   NZ_CP117677
Coordinates   53935..54171 (-) Length   78 a.a.
NCBI ID   WP_273963080.1    Uniprot ID   -
Organism   Caloramator sp. mosi_1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 48935..59171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PL321_RS00360 (PL321_00360) fabG 49584..50324 (-) 741 WP_273963078.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  PL321_RS00365 (PL321_00365) - 50389..51767 (-) 1379 Protein_73 GntP family permease -
  PL321_RS00370 (PL321_00370) - 51785..53331 (-) 1547 Protein_74 acyl CoA:acetate/3-ketoacid CoA transferase -
  PL321_RS00375 (PL321_00375) - 53561..53740 (-) 180 WP_273963079.1 helix-turn-helix domain-containing protein -
  PL321_RS00380 (PL321_00380) pilR 53935..54171 (-) 237 WP_273963080.1 sigma 54-interacting transcriptional regulator Regulator
  PL321_RS00385 (PL321_00385) - 54198..54458 (-) 261 WP_273963081.1 sigma 54-interacting transcriptional regulator -
  PL321_RS00390 (PL321_00390) - 54524..55303 (-) 780 WP_273963082.1 CBS domain-containing protein -
  PL321_RS00395 (PL321_00395) - 55474..55890 (-) 417 WP_273963083.1 MaoC family dehydratase -
  PL321_RS00400 (PL321_00400) - 55943..56949 (-) 1007 Protein_80 electron transfer flavoprotein subunit alpha/FixB family protein -
  PL321_RS00405 (PL321_00405) - 56962..57741 (-) 780 WP_273963084.1 electron transfer flavoprotein subunit beta/FixA family protein -
  PL321_RS00410 (PL321_00410) - 57754..58891 (-) 1138 Protein_82 acyl-CoA dehydrogenase -

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9136.02 Da        Isoelectric Point: 10.9925

>NTDB_id=786891 PL321_RS00380 WP_273963080.1 53935..54171(-) (pilR) [Caloramator sp. mosi_1]
MQAKLLRVIQEKEIERIGGTSPKRIDVRIIAATNKNLEELVIKGQFREDLFYRLNVITLNIPPLRERKKILLKLLITI

Nucleotide


Download         Length: 237 bp        

>NTDB_id=786891 PL321_RS00380 WP_273963080.1 53935..54171(-) (pilR) [Caloramator sp. mosi_1]
ATGCAGGCCAAACTTCTAAGAGTAATTCAAGAAAAGGAGATAGAAAGAATAGGTGGGACAAGCCCCAAAAGGATTGATGT
TAGAATAATTGCAGCTACAAATAAAAATTTAGAGGAGCTTGTAATAAAGGGCCAGTTTAGAGAAGATTTGTTTTACAGAT
TAAATGTAATTACATTAAACATTCCACCGCTTAGGGAGAGAAAAAAGATATTACTGAAATTGCTTATTACTATTTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(1-59)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

56.522

88.462

0.5
  pilR Acinetobacter baumannii strain A118

47.297

94.872

0.449
  luxO Vibrio cholerae strain A1552

42.308

100

0.423