Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   Q3Y56_RS07300 Genome accession   NZ_CP130713
Coordinates   1715863..1717992 (-) Length   709 a.a.
NCBI ID   WP_304461138.1    Uniprot ID   -
Organism   Streptomyces sp. XD-27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1710863..1722992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3Y56_RS07280 (Q3Y56_07280) - 1711147..1711803 (+) 657 WP_304461134.1 MBL fold metallo-hydrolase -
  Q3Y56_RS07285 (Q3Y56_07285) - 1711861..1712877 (-) 1017 WP_304461135.1 TerC family protein -
  Q3Y56_RS07290 (Q3Y56_07290) - 1713094..1715013 (-) 1920 WP_304461136.1 TerD family protein -
  Q3Y56_RS07295 (Q3Y56_07295) - 1715132..1715710 (-) 579 WP_304461137.1 TerD family protein -
  Q3Y56_RS07300 (Q3Y56_07300) uvrB 1715863..1717992 (-) 2130 WP_304461138.1 excinuclease ABC subunit UvrB Machinery gene
  Q3Y56_RS07305 (Q3Y56_07305) - 1718223..1719125 (+) 903 WP_304461139.1 glycerophosphodiester phosphodiesterase family protein -
  Q3Y56_RS07310 (Q3Y56_07310) - 1719287..1719859 (+) 573 WP_304461140.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  Q3Y56_RS07315 (Q3Y56_07315) - 1719885..1720526 (-) 642 WP_304465503.1 uridine kinase -
  Q3Y56_RS07320 (Q3Y56_07320) - 1720601..1721146 (+) 546 WP_304461141.1 DUF1697 domain-containing protein -
  Q3Y56_RS07325 (Q3Y56_07325) - 1721256..1722425 (+) 1170 WP_304461142.1 aromatic acid exporter family protein -

Sequence

Protein


Download         Length: 709 a.a.        Molecular weight: 79943.82 Da        Isoelectric Point: 4.8336

>NTDB_id=786839 Q3Y56_RS07300 WP_304461138.1 1715863..1717992(-) (uvrB) [Streptomyces sp. XD-27]
MRPVSQIERKVAPFEVVSPYQPSGDQPTAITDLERRIRAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLKVGDEIDRDQLLRRFVDIQYTRNDVAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVISDDQELYVFPATHYVAGPERMERAIAGIERELEETLARLEKQGKLLEAQRLRMRTTYDIEMMRQIGTCSGIENYSLH
IDGRESGTPPHTLLDYFPEDFLLVIDESHVTVPQIGAMYEGDASRKRTLIEHGFRLPSALDNRPLKWEEFLERVDQTVYL
SATPGPYELSRGDGFVEQIIRPTGLVDPEVVVKPTEGQIDDLIHEIRTRTEKDERVLVTTLTKKMAEDLTDYMLELGIQV
RYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMEKAIDETNRRRDKQIAYNKANGIDPQPLRKKIGDIVATIAREEIDTKELLGSGYRQQEQGGVKGKGQAKAPV
PALAAHKQGAKGGKPTDRPATELAELIEEMTERMRAAAAELQFEVAARLRDEVGELKKELRQMREAGLA

Nucleotide


Download         Length: 2130 bp        

>NTDB_id=786839 Q3Y56_RS07300 WP_304461138.1 1715863..1717992(-) (uvrB) [Streptomyces sp. XD-27]
ATGCGGCCCGTATCCCAGATCGAACGCAAGGTGGCGCCCTTCGAGGTCGTCAGCCCCTACCAGCCCAGCGGCGACCAGCC
GACGGCCATCACCGACCTCGAGCGGCGCATCCGCGCCGGTGAGAAGGACGTCGTGTTGCTCGGGGCGACCGGCACCGGCA
AGTCCGCGACCACCGCGTGGATGATCGAGAAGCTCCAGCGGCCGACCCTCGTGATGGCGCCCAACAAGACGCTCGCCGCG
CAGCTCGCCAACGAGTTCCGCGAGCTTCTGCCGAACAACGCGGTGGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCCATCAACGAGGAGGTCGAGCGGCTGCGCCACT
CCGCCACGAACTCCCTGCTCACCCGGCGCGACGTCGTCGTGGTGGCCTCCGTCTCCTGCATCTACGGCCTGGGCACACCG
CAGGAGTACGTCGACCGGATGGTGCCGCTCAAGGTCGGCGACGAGATCGACCGCGACCAGCTGCTGCGCAGATTCGTGGA
CATCCAGTACACGCGCAACGACGTGGCGTTCACCCGCGGCACCTTCCGGGTCCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTCGCGGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCCCTGTCCACGCTCCACCCGCTGACCGGC
GAGGTCATCTCCGACGACCAGGAGCTGTACGTCTTCCCGGCCACCCACTACGTCGCGGGACCCGAGCGCATGGAGCGGGC
CATCGCCGGGATCGAGCGCGAGCTGGAGGAGACGCTGGCCCGGCTGGAGAAGCAGGGCAAGCTCCTCGAAGCCCAGCGAC
TGCGGATGCGGACGACCTACGACATCGAGATGATGCGCCAGATCGGCACCTGCTCCGGCATCGAGAACTACTCGCTGCAC
ATCGACGGCCGCGAGTCCGGGACCCCGCCGCACACCCTGCTCGACTACTTCCCCGAGGACTTCCTCCTCGTCATCGACGA
GTCGCACGTCACCGTCCCGCAGATCGGCGCCATGTACGAGGGCGACGCCTCCCGTAAGCGCACGCTGATCGAGCACGGCT
TCCGGCTGCCCTCCGCCCTGGACAACCGCCCACTCAAGTGGGAGGAGTTCCTGGAGCGGGTCGACCAGACCGTGTACCTG
TCCGCGACGCCCGGTCCGTACGAGCTCTCGCGCGGCGACGGCTTCGTCGAGCAGATCATCCGGCCCACCGGACTGGTCGA
CCCCGAGGTCGTGGTCAAGCCCACCGAGGGACAGATCGACGACCTCATCCACGAGATCCGCACGCGCACCGAGAAGGACG
AGCGCGTCCTGGTGACCACCCTGACCAAGAAGATGGCCGAGGACCTCACCGACTACATGCTGGAACTCGGCATCCAGGTG
CGCTATCTGCACAGCGACGTCGACACGCTGCGCCGCGTGGAACTGCTGCGCGAGCTGCGCGCCGGCGAGTACGACGTCCT
GGTCGGCATCAACCTGCTGCGCGAGGGCCTGGACCTCCCGGAGGTCTCCCTGGTCGCGATCCTGGACGCCGACAAGGAAG
GCTTCCTGCGCTCCGGGACCTCGCTGATCCAGACGATCGGACGTGCCGCCCGTAACGTCTCGGGCCAGGTCCACATGTAC
GCCGACAAGATCACCCCGGCGATGGAGAAGGCCATCGACGAGACCAACCGCCGCCGGGACAAGCAGATCGCCTACAACAA
GGCGAACGGCATCGACCCGCAGCCGCTCCGAAAGAAGATCGGCGACATCGTCGCCACCATCGCGCGCGAGGAGATCGACA
CCAAGGAACTGCTGGGCAGCGGCTACCGGCAGCAGGAACAGGGCGGGGTCAAGGGCAAGGGCCAGGCCAAGGCGCCGGTG
CCCGCGCTCGCCGCGCACAAGCAGGGGGCGAAGGGCGGCAAGCCGACCGACCGGCCCGCCACCGAACTCGCCGAGCTCAT
CGAGGAGATGACCGAGCGGATGCGCGCCGCGGCGGCGGAGCTGCAGTTCGAGGTCGCGGCCCGGCTGCGCGACGAGGTGG
GGGAGTTGAAGAAGGAGCTCCGGCAGATGCGGGAAGCCGGGCTCGCCTGA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(559-600)

Helicase conserved C-terminal domain (Helicase_C)

(441-551)

Type III restriction enzyme, res subunit (ResIII)

(25-134)

UvrB/uvrC motif (UVR)

(665-699)

UvrB interaction domain (UvrB_inter)

(169-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.849

97.038

0.561
  uvrB Streptococcus pneumoniae R6

57.849

97.038

0.561
  uvrB Streptococcus pneumoniae D39

57.849

97.038

0.561