Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   LLID5_RS11445 Genome accession   NZ_AP025701
Coordinates   2377652..2378245 (-) Length   197 a.a.
NCBI ID   WP_003131995.1    Uniprot ID   Q9CDL2
Organism   Lactococcus lactis strain ID-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2372652..2383245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLID5_RS11410 (LLID5_22390) - 2372870..2373070 (+) 201 WP_003131983.1 hypothetical protein -
  LLID5_RS11415 (LLID5_22400) glnA 2373129..2374469 (-) 1341 WP_003131984.1 type I glutamate--ammonia ligase -
  LLID5_RS11420 (LLID5_22410) - 2374531..2374896 (-) 366 WP_003131985.1 MerR family transcriptional regulator -
  LLID5_RS11425 (LLID5_22420) - 2374997..2375434 (-) 438 WP_251918803.1 low molecular weight protein-tyrosine-phosphatase -
  LLID5_RS11430 (LLID5_22430) - 2375578..2375742 (-) 165 WP_003131988.1 hypothetical protein -
  LLID5_RS11435 (LLID5_22440) - 2375978..2376223 (-) 246 WP_251918805.1 AAA family ATPase -
  LLID5_RS11440 (LLID5_22450) ruvB 2376524..2377525 (-) 1002 WP_003131994.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  LLID5_RS11445 (LLID5_22460) ruvA 2377652..2378245 (-) 594 WP_003131995.1 Holliday junction branch migration protein RuvA Machinery gene
  LLID5_RS11450 (LLID5_22470) hexB 2378358..2380328 (-) 1971 WP_251918808.1 DNA mismatch repair endonuclease MutL Machinery gene
  LLID5_RS11455 (LLID5_22480) - 2380457..2381152 (-) 696 WP_012898700.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21166.73 Da        Isoelectric Point: 5.8174

>NTDB_id=78674 LLID5_RS11445 WP_003131995.1 2377652..2378245(-) (ruvA) [Lactococcus lactis strain ID-5]
MFEYLNGKLVKISPTNIVIDVAGIGYLISVANPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNEAEKALFLRLISVSGI
GPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKTAMQMVLDLAGKFDATGTVGISLLDAGPAGNLALEEAIEALQ
ALGYKATELKKIEKKLAQETGLTSEEYIKSALKLMMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=78674 LLID5_RS11445 WP_003131995.1 2377652..2378245(-) (ruvA) [Lactococcus lactis strain ID-5]
ATGTTTGAATATCTTAATGGAAAATTAGTAAAAATTTCCCCAACAAATATTGTAATTGATGTAGCAGGAATTGGTTATCT
TATCAGTGTAGCTAACCCTTACGCTTGGTCTGCTTTGATGAACACAGAAGTAAAAATTTATGTTCATCAAGTCATTCGCG
AAGATGCCCACAGCCTCTATGGTTTTGTTAACGAGGCCGAAAAAGCTTTATTCTTACGTCTGATCAGCGTTTCTGGGATT
GGGCCAAAATCAGCTCTGGCCATCATTGCGGCGGCTGATAACGAAGGTTTAATCACTGCTATTGACAATAGTGATATCAA
GTATTTAACTAAATTTCCAGGAGTTGGTAAAAAAACAGCCATGCAGATGGTGCTTGATTTGGCTGGGAAATTTGATGCGA
CAGGAACTGTAGGTATTTCTCTTCTTGATGCTGGACCTGCTGGCAATCTTGCTTTGGAAGAAGCGATTGAAGCGCTGCAA
GCTTTGGGTTATAAAGCAACAGAATTGAAGAAAATTGAGAAAAAATTAGCTCAAGAAACAGGTCTGACCAGCGAAGAATA
TATCAAATCAGCCTTAAAACTTATGATGAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-196)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CDL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

60.101

100

0.604
  ruvA Streptococcus pneumoniae R6

60.101

100

0.604
  ruvA Streptococcus pneumoniae D39

60.101

100

0.604
  ruvA Bacillus subtilis subsp. subtilis str. 168

44.828

100

0.462

Multiple sequence alignment