Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   Q5R05_RS07295 Genome accession   NZ_CP130703
Coordinates   1432218..1434224 (-) Length   668 a.a.
NCBI ID   WP_014974741.1    Uniprot ID   K0DDQ1
Organism   Leuconostoc carnosum strain AMS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1427218..1439224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5R05_RS07280 (Q5R05_07280) yvcK 1427841..1428815 (-) 975 WP_305068428.1 gluconeogenesis factor YvcK family protein -
  Q5R05_RS07285 (Q5R05_07285) - 1429055..1429177 (+) 123 WP_172600981.1 putative metal homeostasis protein -
  Q5R05_RS07290 (Q5R05_07290) uvrA 1429230..1432094 (-) 2865 WP_135197705.1 excinuclease ABC subunit UvrA Machinery gene
  Q5R05_RS07295 (Q5R05_07295) uvrB 1432218..1434224 (-) 2007 WP_014974741.1 excinuclease ABC subunit UvrB Machinery gene
  Q5R05_RS07300 (Q5R05_07300) - 1434447..1436606 (-) 2160 WP_135198188.1 LTA synthase family protein -
  Q5R05_RS07305 (Q5R05_07305) - 1436675..1436941 (-) 267 WP_014974743.1 YkuJ family protein -
  Q5R05_RS07310 (Q5R05_07310) - 1436934..1437971 (-) 1038 WP_135198189.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  Q5R05_RS07315 (Q5R05_07315) - 1437993..1439000 (-) 1008 WP_135197709.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 668 a.a.        Molecular weight: 76047.05 Da        Isoelectric Point: 4.6189

>NTDB_id=786644 Q5R05_RS07295 WP_014974741.1 1432218..1434224(-) (uvrB) [Leuconostoc carnosum strain AMS1]
MREHVADHGFEVVSKYQPTGDQPRAIDQLVRGINAGVKEQVLLGATGTGKTFTISNVIKDIKKPTLVLSHNKTLAGQLYG
ELKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAVNDEIDQLRNSATSSLLSRNDVIVVASVSSIFGLGDPHQYQ
EHVINLRVGNEYGRNQLMMDLINVQFTRNDIDFHRGTFRVRGDVVEIFPASEDEMALRVEFFGDEIDRIREINSLTGETS
SERDYVAIYPAKHFMTDDDQMSTALAGITEEMNQQVALFEKEGKLIEAQRIKQRTEYDLAMLEEMGFVGGIENYSRWMDG
RQVDEPPFTLLDFFPDDFLVVVDESHVTMPQIRGMFNGDRARKETLVNYGFRLPSALDNRPLKLPEFEQHVNQIIYMSAT
PGDYELERVTSDHIIQQIIRPTGLLDPEVEVRPVMGQIDDLVGEINKRAQKDERVFITTLTKRMAEDLTDYLKDMGIKVA
YLHADIKTLERTEIIRDLRLGKYDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNPRSLIQTIGRAARNSDGHVIMYA
DKTTRSMKEAMDETARRREIQTQYNVEHGITPTTIKKDIRDLISVRTDSTDNQEVIDLTQVAFKDLPKDEQMSIIGNLEK
QMKAAAKSLDFEEAAQLRDNVMELKAVL

Nucleotide


Download         Length: 2007 bp        

>NTDB_id=786644 Q5R05_RS07295 WP_014974741.1 1432218..1434224(-) (uvrB) [Leuconostoc carnosum strain AMS1]
ATGCGTGAACATGTTGCTGACCACGGCTTCGAAGTGGTTTCAAAATATCAGCCAACAGGCGATCAGCCACGAGCCATTGA
TCAACTCGTGAGAGGTATTAATGCTGGCGTGAAAGAGCAAGTTTTACTTGGTGCTACGGGAACAGGGAAGACTTTCACAA
TTTCTAATGTCATTAAAGATATTAAGAAGCCAACACTGGTATTGAGTCATAATAAGACCTTAGCTGGTCAACTTTATGGT
GAGTTGAAAGAGTTTTTTCCAAATAATGCGGTTGAATATTTTGTGTCCTATTATGATTATTATCAACCAGAAGCTTATGT
CCCTAGTTCTGATACATTTATTGAAAAAGATTCAGCTGTCAATGATGAAATCGATCAATTACGTAACTCAGCAACTAGTT
CGTTGCTATCAAGAAATGATGTCATTGTTGTGGCATCAGTTAGTTCTATTTTTGGATTAGGTGATCCGCATCAGTACCAA
GAACATGTGATTAATTTACGTGTAGGAAATGAATATGGTCGTAATCAGTTAATGATGGATTTGATTAACGTTCAGTTTAC
GCGAAATGATATTGATTTTCACCGTGGTACTTTTCGTGTGCGTGGGGATGTTGTGGAAATTTTCCCAGCATCTGAAGATG
AAATGGCATTACGCGTTGAATTTTTTGGAGATGAAATTGATCGTATTCGTGAAATTAATTCATTAACGGGGGAAACATCA
TCTGAGCGTGACTATGTTGCAATTTATCCAGCTAAACATTTCATGACGGATGATGATCAAATGTCGACTGCTTTGGCCGG
CATTACTGAAGAAATGAATCAACAAGTGGCCTTATTTGAAAAAGAGGGCAAGTTAATAGAGGCTCAACGTATCAAACAGC
GAACAGAGTACGACTTAGCAATGTTAGAAGAAATGGGATTTGTCGGTGGTATTGAAAACTATTCGCGTTGGATGGATGGT
CGCCAAGTTGACGAACCGCCATTTACTTTGCTAGATTTCTTCCCAGATGATTTTCTCGTAGTGGTCGATGAGAGTCATGT
GACCATGCCGCAAATTCGTGGTATGTTCAATGGAGATCGGGCACGTAAAGAAACGTTAGTAAATTATGGTTTTCGTTTGC
CATCGGCACTTGATAATCGACCACTGAAACTGCCTGAGTTTGAACAGCATGTGAACCAAATTATTTATATGTCAGCGACA
CCAGGTGACTATGAATTAGAACGAGTGACGAGTGATCACATTATACAGCAAATCATTCGACCCACTGGGTTATTGGATCC
AGAGGTTGAAGTACGGCCTGTTATGGGACAAATTGATGACTTGGTAGGTGAAATTAATAAACGTGCACAAAAGGATGAAC
GTGTATTTATTACAACCCTAACTAAGCGAATGGCAGAAGATTTAACTGATTATTTAAAGGACATGGGAATCAAGGTAGCC
TATTTACATGCAGATATTAAGACGCTTGAACGAACTGAAATTATCCGTGATTTACGTTTAGGTAAATATGATGTGCTGAT
TGGTATTAATTTATTACGTGAAGGTATTGATGTACCTGAAGTGTCCTTAGTTGCTATTTTAGATGCCGATAAGGAAGGCT
TTTTACGTAATCCACGTTCTTTGATTCAGACGATAGGTCGTGCAGCCAGAAACTCGGATGGCCATGTGATTATGTATGCT
GATAAAACGACTAGGTCAATGAAAGAAGCTATGGATGAAACAGCCAGACGACGTGAAATTCAAACACAATATAATGTTGA
ACATGGTATTACACCAACAACAATTAAAAAAGATATTCGCGATTTGATTTCCGTACGTACAGATTCAACTGATAATCAAG
AAGTGATTGATTTGACACAAGTTGCTTTCAAAGATTTGCCAAAAGATGAACAAATGAGTATTATTGGTAATCTTGAAAAG
CAGATGAAGGCTGCCGCCAAGTCACTAGACTTTGAAGAGGCGGCACAGCTGCGCGATAATGTGATGGAATTAAAAGCTGT
TTTGTAA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(558-600)

UvrB/uvrC motif (UVR)

(635-666)

UvrB interaction domain (UvrB_inter)

(164-254)

Helicase conserved C-terminal domain (Helicase_C)

(442-551)

Type III restriction enzyme, res subunit (ResIII)

(17-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0DDQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

69.865

99.85

0.698
  uvrB Streptococcus pneumoniae D39

69.865

99.85

0.698
  uvrB Streptococcus pneumoniae TIGR4

69.715

99.85

0.696