Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   LLID5_RS10600 Genome accession   NZ_AP025701
Coordinates   2205862..2206527 (+) Length   221 a.a.
NCBI ID   WP_058204396.1    Uniprot ID   -
Organism   Lactococcus lactis strain ID-5     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2200862..2211527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLID5_RS10570 (LLID5_20800) - 2202010..2202213 (-) 204 WP_251918723.1 lactococcin 972 family bacteriocin -
  LLID5_RS10575 (LLID5_20830) - 2202630..2203358 (-) 729 WP_251918726.1 LytTR family transcriptional regulator DNA-binding domain-containing protein -
  LLID5_RS10580 (LLID5_20840) - 2203550..2203771 (+) 222 WP_010906270.1 YqgQ family protein -
  LLID5_RS10585 (LLID5_20850) - 2203806..2204777 (+) 972 WP_017865099.1 ROK family glucokinase -
  LLID5_RS10590 (LLID5_20860) - 2204780..2205166 (+) 387 WP_004254540.1 rhodanese-like domain-containing protein -
  LLID5_RS10595 (LLID5_20870) - 2205249..2205695 (-) 447 WP_033900772.1 Dps family protein -
  LLID5_RS10600 cclA/cilC 2205862..2206527 (+) 666 WP_058204396.1 A24 family peptidase Machinery gene
  LLID5_RS10605 (LLID5_20880) dinB 2206478..2207572 (-) 1095 WP_251918728.1 DNA polymerase IV -
  LLID5_RS10610 (LLID5_20890) - 2207651..2208142 (-) 492 WP_058204398.1 prolyl-tRNA synthetase associated domain-containing protein -
  LLID5_RS10615 (LLID5_20900) - 2208221..2209714 (-) 1494 WP_015427125.1 basic amino acid/polyamine antiporter -
  LLID5_RS10620 (LLID5_20910) - 2209906..2211036 (-) 1131 WP_251918730.1 aminotransferase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25638.79 Da        Isoelectric Point: 8.8481

>NTDB_id=78656 LLID5_RS10600 WP_058204396.1 2205862..2206527(+) (cclA/cilC) [Lactococcus lactis strain ID-5]
MDILFIFVIGSIFGSFFGLIVDRIPLRKSIIFGRSHCDSCQQLLAYRDLIPIFSQISSGSHCRYCKSKIPYLYVFLEFSS
SLIFVLAWVNYLKPSQFLLIILSLILSAFDYRQHSFPFVIWFIFALSFILIFPLSPLFYFWLILAVLAEKFNLRVGSGDF
LWFFTASFSLTFLNEMLLLQIACSLGIIYYLITKKRAEIAFIPFLTIAYLMLLFGHQILSP

Nucleotide


Download         Length: 666 bp        

>NTDB_id=78656 LLID5_RS10600 WP_058204396.1 2205862..2206527(+) (cclA/cilC) [Lactococcus lactis strain ID-5]
ATGGACATTTTATTTATATTTGTAATTGGAAGTATTTTTGGCTCCTTTTTTGGCTTAATAGTTGACCGTATTCCACTAAG
AAAATCAATTATTTTTGGACGCTCACATTGTGATTCTTGTCAGCAACTTTTAGCCTATCGTGATCTAATTCCTATTTTTT
CTCAAATAAGCTCTGGCTCACATTGCCGTTATTGTAAAAGTAAAATTCCATATTTATATGTTTTTTTGGAGTTCTCATCA
TCTTTAATTTTTGTTTTAGCTTGGGTAAATTATCTTAAACCTAGTCAATTTTTACTGATTATTCTTTCACTAATTTTATC
TGCTTTTGATTATCGTCAGCACAGTTTTCCTTTTGTTATCTGGTTTATTTTTGCACTCAGTTTTATTTTAATATTTCCTC
TTTCTCCCCTTTTCTATTTTTGGCTTATTTTAGCCGTCTTAGCTGAAAAATTCAATTTAAGAGTTGGCAGCGGTGATTTT
TTATGGTTTTTTACCGCTTCATTTTCTCTAACTTTCTTAAACGAAATGCTGCTCCTTCAAATCGCTTGTTCACTTGGTAT
CATTTATTATCTAATCACAAAAAAACGAGCTGAAATTGCATTCATCCCGTTTCTAACTATTGCATATCTAATGTTGCTTT
TTGGACACCAAATTCTGTCACCGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

37.443

99.095

0.371
  cclA/cilC Streptococcus pneumoniae Rx1

37.674

97.285

0.367
  cclA/cilC Streptococcus pneumoniae D39

37.674

97.285

0.367
  cclA/cilC Streptococcus pneumoniae R6

37.674

97.285

0.367
  cclA/cilC Streptococcus pneumoniae TIGR4

37.209

97.285

0.362

Multiple sequence alignment