Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   Q4V64_RS34390 Genome accession   NZ_CP130630
Coordinates   7597028..7598002 (+) Length   324 a.a.
NCBI ID   WP_124439340.1    Uniprot ID   -
Organism   Streptomyces sp. NL15-2K     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 7592028..7603002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4V64_RS34375 (Q4V64_34370) - 7593493..7595124 (+) 1632 WP_124439343.1 ABC transporter substrate-binding protein -
  Q4V64_RS34380 (Q4V64_34375) - 7595131..7596054 (+) 924 WP_124439342.1 ABC transporter permease -
  Q4V64_RS34385 (Q4V64_34380) - 7596047..7597018 (+) 972 WP_124439341.1 ABC transporter permease -
  Q4V64_RS34390 (Q4V64_34385) amiE 7597028..7598002 (+) 975 WP_124439340.1 ABC transporter ATP-binding protein Regulator
  Q4V64_RS34395 (Q4V64_34390) - 7597995..7599041 (+) 1047 WP_124439339.1 dipeptide ABC transporter ATP-binding protein -
  Q4V64_RS34400 (Q4V64_34395) - 7599259..7601436 (-) 2178 WP_124439338.1 prolyl oligopeptidase family serine peptidase -
  Q4V64_RS34405 (Q4V64_34400) - 7601670..7601864 (+) 195 WP_095753716.1 hypothetical protein -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 35481.05 Da        Isoelectric Point: 6.2360

>NTDB_id=786294 Q4V64_RS34390 WP_124439340.1 7597028..7598002(+) (amiE) [Streptomyces sp. NL15-2K]
MLLEVRDLHVEFRTRDGVAKAVNGVSYAVDAGETLAVLGESGSGKSVTAQAVMGILDMPPGRITGGEILFQGKDLLKLKE
EERRKVRGAEMAMIFQDALSSLNPVLSVGDQLGEMFVVHRGMSKKDARAKAVELMDRVRIPAARERVKQYPHQFSGGMRQ
RIMIAMALALEPALIIADEPTTALDVTVQAQVMDLLAELRREYDMGLILITHDLGVVADVADRIAVMYAGRIVESAPVHD
LYKAPAHPYTQGLLDSIPRLDQKGQELYAIKGLPPNLTNIPPGCAFNPRCPTAQDLCRTDVPPLHDVSEDRGSACHFWRE
CLHG

Nucleotide


Download         Length: 975 bp        

>NTDB_id=786294 Q4V64_RS34390 WP_124439340.1 7597028..7598002(+) (amiE) [Streptomyces sp. NL15-2K]
ATGCTGCTCGAAGTGCGTGACCTGCACGTGGAGTTCCGGACCCGGGACGGCGTCGCCAAGGCCGTCAACGGCGTCAGCTA
CGCCGTGGACGCGGGCGAGACGCTCGCCGTGCTCGGCGAGTCCGGCTCCGGCAAGTCGGTGACCGCCCAGGCGGTGATGG
GGATCCTCGACATGCCTCCCGGGCGGATCACCGGCGGCGAGATCCTCTTCCAGGGCAAGGACCTCCTGAAGCTGAAGGAG
GAGGAGCGGCGGAAGGTCCGGGGCGCCGAGATGGCGATGATCTTCCAGGACGCACTGTCCTCGCTGAACCCCGTGCTGAG
CGTCGGCGATCAGCTCGGCGAGATGTTCGTGGTCCACCGGGGCATGTCGAAGAAGGACGCGCGGGCGAAGGCCGTGGAGC
TGATGGACCGCGTCCGCATCCCCGCGGCCAGGGAACGGGTGAAGCAGTACCCGCACCAGTTCTCGGGAGGCATGCGCCAA
CGCATCATGATCGCGATGGCGCTGGCCCTCGAACCGGCACTGATCATCGCCGACGAACCGACCACGGCCCTCGACGTGAC
GGTCCAGGCCCAGGTCATGGACCTGCTCGCCGAGTTGCGGCGCGAGTACGACATGGGGCTGATCCTGATCACCCACGACC
TGGGCGTCGTCGCGGACGTGGCCGACCGGATCGCCGTGATGTACGCGGGCCGGATCGTGGAGTCGGCGCCGGTGCACGAC
CTCTACAAGGCGCCCGCCCACCCCTACACCCAGGGCCTGTTGGACTCCATCCCGCGCCTGGACCAGAAGGGCCAGGAGCT
CTACGCGATCAAGGGCCTGCCTCCCAACCTCACGAACATCCCGCCCGGTTGCGCCTTCAACCCCCGCTGCCCGACGGCCC
AGGACCTGTGCCGAACCGACGTACCACCGCTCCACGACGTGTCCGAGGACCGGGGGAGCGCCTGCCACTTCTGGAGGGAG
TGCCTGCATGGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

47.04

99.074

0.466
  oppD Streptococcus mutans UA159

47.771

96.914

0.463
  amiE Streptococcus thermophilus LMG 18311

46.729

99.074

0.463
  amiE Streptococcus thermophilus LMD-9

46.729

99.074

0.463