Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSP57_RS10315 Genome accession   NZ_CP117527
Coordinates   2240900..2241535 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain MF1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2235900..2246535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSP57_RS10300 (PSP57_10300) - 2236606..2237850 (+) 1245 WP_023095394.1 lipoprotein-releasing ABC transporter permease subunit -
  PSP57_RS10305 (PSP57_10305) - 2237938..2238471 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  PSP57_RS10310 (PSP57_10310) comA 2238602..2240827 (+) 2226 WP_023095395.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSP57_RS10315 (PSP57_10315) exbB 2240900..2241535 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSP57_RS10320 (PSP57_10320) - 2241532..2241972 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  PSP57_RS10325 (PSP57_10325) lpxK 2241972..2242970 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  PSP57_RS10330 (PSP57_10330) - 2243008..2243193 (+) 186 WP_003091157.1 Trm112 family protein -
  PSP57_RS10335 (PSP57_10335) kdsB 2243193..2243957 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSP57_RS10340 (PSP57_10340) - 2243957..2244421 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  PSP57_RS10345 (PSP57_10345) murB 2244418..2245437 (+) 1020 WP_273860802.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=786295 PSP57_RS10315 WP_003091163.1 2240900..2241535(+) (exbB) [Pseudomonas aeruginosa strain MF1]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=786295 PSP57_RS10315 WP_003091163.1 2240900..2241535(+) (exbB) [Pseudomonas aeruginosa strain MF1]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTTGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGTTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81