Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   Q4V64_RS12275 Genome accession   NZ_CP130630
Coordinates   2831208..2833346 (-) Length   712 a.a.
NCBI ID   WP_124443110.1    Uniprot ID   -
Organism   Streptomyces sp. NL15-2K     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2826208..2838346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4V64_RS12260 (Q4V64_12255) - 2827012..2828007 (-) 996 WP_172629435.1 TerC family protein -
  Q4V64_RS12265 (Q4V64_12260) - 2828230..2830347 (-) 2118 WP_124443111.1 TerD family protein -
  Q4V64_RS12270 (Q4V64_12265) - 2830403..2830969 (-) 567 WP_124443242.1 TerD family protein -
  Q4V64_RS12275 (Q4V64_12270) uvrB 2831208..2833346 (-) 2139 WP_124443110.1 excinuclease ABC subunit UvrB Machinery gene
  Q4V64_RS12280 (Q4V64_12275) - 2833440..2834309 (-) 870 WP_124443109.1 MHYT domain-containing protein -
  Q4V64_RS12285 (Q4V64_12280) - 2834598..2835473 (+) 876 WP_124443108.1 glycerophosphodiester phosphodiesterase family protein -
  Q4V64_RS12290 (Q4V64_12285) - 2835556..2836110 (+) 555 WP_124443107.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  Q4V64_RS12295 (Q4V64_12290) - 2836316..2836744 (-) 429 WP_172629434.1 VOC family protein -
  Q4V64_RS12300 (Q4V64_12295) - 2836844..2837752 (+) 909 WP_124443105.1 pseudouridine-5'-phosphate glycosidase -

Sequence

Protein


Download         Length: 712 a.a.        Molecular weight: 79902.62 Da        Isoelectric Point: 4.8569

>NTDB_id=786249 Q4V64_RS12275 WP_124443110.1 2831208..2833346(-) (uvrB) [Streptomyces sp. NL15-2K]
MRPVSQIERTVAPFEVVSPYQPSGDQPTAIADLARRIEAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLRVGDEIDRDDLLRRFVDIQYTRNDLAFSRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EIISDDQQLYVFPASHYVAGPERLERAVNDIEKELGERLAELEKQGKLLEAQRLRMRTTYDLEMLRQIGSCSGVENYSMH
FDGRSPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYL
SATPGKYELSRGNGVVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRGRTEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRVELLRELRSGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMEKAIEETNRRREKQVAYNKERGLDPQPLRKKINDIVAQIAREDIDTEQLLGSGYRKAKDGKGAKAPVPALSG
KAAGSAKAGKGKAKETVPTDRPAAELAEQIEEMTARMRAAAADLQFEIAARLRDEVSEMKKELRQMKEAGLA

Nucleotide


Download         Length: 2139 bp        

>NTDB_id=786249 Q4V64_RS12275 WP_124443110.1 2831208..2833346(-) (uvrB) [Streptomyces sp. NL15-2K]
ATGCGGCCCGTTTCCCAGATCGAACGCACGGTGGCGCCCTTCGAGGTCGTCAGCCCGTACCAGCCCAGCGGCGACCAGCC
GACCGCCATCGCCGACCTCGCCCGGCGCATCGAGGCCGGTGAGAAGGACGTCGTCCTGCTCGGCGCGACCGGCACCGGCA
AGTCCGCCACCACCGCGTGGATGATCGAGAAGCTCCAGCGCCCCACGCTCGTGATGGCGCCGAACAAGACCCTTGCCGCC
CAGCTGGCGAACGAGTTCCGCGAGCTGCTGCCGAACAACGCGGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTCGAGCGGCTGCGCCACT
CCGCGACCAACTCGCTGCTCACCCGCCGCGACGTCGTGGTGGTCGCCTCGGTCTCCTGCATCTACGGCCTCGGTACGCCG
CAGGAGTACGTGGACCGGATGGTCCCCCTCAGGGTCGGTGACGAGATCGACCGCGACGATCTGCTGCGCCGCTTCGTGGA
CATCCAGTACACCCGCAACGACCTGGCCTTCTCCCGCGGCACCTTCCGCGTCCGCGGTGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTCGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCCCTGTCAACCCTCCACCCGCTCACCGGC
GAGATCATCAGCGACGACCAGCAGCTGTACGTCTTCCCGGCCTCCCACTACGTGGCGGGTCCCGAGCGCCTGGAGCGGGC
CGTCAACGACATCGAGAAGGAACTCGGGGAGCGCTTGGCCGAGCTGGAGAAGCAGGGCAAGCTCCTGGAGGCGCAGCGCC
TCAGGATGCGCACGACGTACGACCTCGAGATGCTCCGCCAGATCGGCAGCTGCTCCGGCGTGGAGAACTACTCGATGCAC
TTCGACGGCCGCTCGCCCGGATCCCCGCCCAACACCCTGCTCGACTACTTCCCGGACGACTTCCTGCTCGTCATCGACGA
GTCGCACGTCACCGTCCCGCAGATCGGCGCCATGTACGAGGGCGACGCCTCCCGCAAGCGCACGCTCGTCGACCACGGCT
TCCGCCTGCCCTCCGCCCTCGACAACCGCCCCCTGAAGTGGGAGGAGTTCCAGGAGCGCATCGGGCAGACCGTCTACCTG
TCGGCGACCCCCGGCAAGTACGAGCTCTCCCGCGGGAACGGCGTCGTCGAGCAGATCATCCGGCCCACCGGCCTCGTCGA
CCCCGAAGTCGTCGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGGGGGCGCACCGAGAAGGACG
AGCGCGTCCTGGTCACCACGCTCACCAAGAAGATGGCCGAGGACCTCACCGACTACTTCCTGGAGCTGGGCATCCAGGTG
CGCTACCTGCACAGCGACGTCGACACCCTGCGCCGCGTGGAGCTGCTGCGCGAACTGCGCTCCGGCGAGTTCGACGTCCT
GGTCGGCATCAACCTCCTCCGCGAGGGCCTCGACCTGCCCGAGGTGTCCCTGGTGGCGATCCTGGACGCCGACAAGGAGG
GATTCCTGCGCTCGGGCACCTCCCTGATCCAGACCATCGGCCGTGCGGCGCGCAACGTCTCCGGACAGGTCCACATGTAC
GCCGACAAGATCACCCCGGCGATGGAGAAGGCCATCGAGGAGACCAACCGCCGCCGGGAGAAGCAGGTCGCGTACAACAA
GGAGAGGGGCCTCGACCCGCAGCCGCTGCGCAAGAAGATCAACGACATCGTCGCGCAGATCGCCCGCGAGGACATCGACA
CCGAGCAGCTGCTCGGCTCCGGCTACCGCAAGGCGAAGGACGGCAAGGGTGCCAAGGCCCCCGTGCCCGCCCTCAGCGGC
AAGGCGGCGGGGAGCGCCAAGGCCGGCAAGGGCAAGGCCAAGGAGACGGTTCCCACCGACCGCCCGGCCGCGGAGCTCGC
GGAGCAGATCGAGGAGATGACTGCACGCATGCGCGCCGCCGCCGCCGACCTCCAGTTCGAGATCGCGGCCCGGCTGCGCG
ACGAGGTCTCCGAGATGAAGAAGGAACTGCGCCAGATGAAGGAGGCCGGCCTGGCCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(448-551)

Ultra-violet resistance protein B (UvrB)

(559-600)

UvrB interaction domain (UvrB_inter)

(169-257)

Type III restriction enzyme, res subunit (ResIII)

(25-134)

UvrB/uvrC motif (UVR)

(668-701)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.413

96.629

0.555
  uvrB Streptococcus pneumoniae R6

57.413

96.629

0.555
  uvrB Streptococcus pneumoniae D39

57.413

96.629

0.555