Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   PGW99_RS09465 Genome accession   NZ_CP117520
Coordinates   1966803..1967138 (-) Length   111 a.a.
NCBI ID   WP_273777432.1    Uniprot ID   -
Organism   Acinetobacter sp. GSS19     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1961803..1972138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW99_RS09435 - 1961876..1962145 (-) 270 WP_273777424.1 HPr family phosphocarrier protein -
  PGW99_RS09440 rapZ 1962142..1962993 (-) 852 WP_273777425.1 RNase adapter RapZ -
  PGW99_RS09445 panC 1963017..1963865 (-) 849 WP_273777427.1 pantoate--beta-alanine ligase -
  PGW99_RS09450 panB 1963869..1964678 (-) 810 WP_273777428.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  PGW99_RS09455 folK 1964723..1965211 (-) 489 WP_273777429.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  PGW99_RS09460 pcnB 1965208..1966668 (-) 1461 WP_273777430.1 polynucleotide adenylyltransferase PcnB -
  PGW99_RS09465 comEA 1966803..1967138 (-) 336 WP_273777432.1 ComEA family DNA-binding protein Machinery gene
  PGW99_RS09470 mazG 1967173..1967988 (-) 816 WP_273777433.1 nucleoside triphosphate pyrophosphohydrolase -
  PGW99_RS09475 - 1968110..1970416 (-) 2307 WP_273777434.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  PGW99_RS09480 rlmD 1970449..1971840 (-) 1392 WP_273777435.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12715.41 Da        Isoelectric Point: 10.2824

>NTDB_id=786232 PGW99_RS09465 WP_273777432.1 1966803..1967138(-) (comEA) [Acinetobacter sp. GSS19]
MGTCVYAQSFDQSYLKWKAEQLAHDERLKQKQLQDHYLARPTQQSSSNDRIRLNQASLQQLQQLSGIGEKKAQAILDYRQ
KNGGFKSVDELQNIKGIGPKLLAKNRDRLSL

Nucleotide


Download         Length: 336 bp        

>NTDB_id=786232 PGW99_RS09465 WP_273777432.1 1966803..1967138(-) (comEA) [Acinetobacter sp. GSS19]
ATGGGGACATGCGTATACGCCCAATCCTTTGATCAATCTTATCTGAAATGGAAAGCTGAGCAGTTGGCTCATGATGAACG
CTTAAAACAAAAACAGCTGCAGGACCATTACCTCGCTCGACCGACCCAGCAAAGCAGCTCCAATGACAGAATTCGCCTGA
ATCAGGCCTCTTTGCAGCAGCTGCAGCAGTTAAGCGGGATTGGTGAGAAGAAAGCACAAGCCATTTTGGATTACCGGCAA
AAAAATGGCGGTTTTAAAAGTGTCGATGAGTTGCAGAATATTAAGGGAATTGGGCCAAAATTATTGGCTAAAAACCGTGA
CCGTTTAAGCCTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(48-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baylyi ADP1

53.704

97.297

0.523
  comEA Acinetobacter baumannii strain A118

49.091

99.099

0.486
  comEA Acinetobacter baumannii D1279779

49.091

99.099

0.486