Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   PGW99_RS07020 Genome accession   NZ_CP117520
Coordinates   1458358..1459068 (+) Length   236 a.a.
NCBI ID   WP_273776865.1    Uniprot ID   -
Organism   Acinetobacter sp. GSS19     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1453358..1464068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW99_RS07005 - 1453494..1454780 (-) 1287 WP_273776862.1 DUF945 family protein -
  PGW99_RS07010 clpB 1454963..1457542 (-) 2580 WP_273776863.1 ATP-dependent chaperone ClpB -
  PGW99_RS07015 - 1457784..1458206 (-) 423 WP_273776864.1 OsmC family protein -
  PGW99_RS07020 crp 1458358..1459068 (+) 711 WP_273776865.1 cAMP-activated global transcriptional regulator CRP Regulator
  PGW99_RS07025 - 1459258..1460307 (+) 1050 WP_273776866.1 NADP(H)-dependent aldo-keto reductase -
  PGW99_RS07030 - 1460358..1461137 (-) 780 WP_273779460.1 M48 family metallopeptidase -
  PGW99_RS07035 - 1461390..1461695 (-) 306 WP_273776867.1 hypothetical protein -
  PGW99_RS07040 - 1461854..1463173 (-) 1320 WP_273776868.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26665.31 Da        Isoelectric Point: 4.6167

>NTDB_id=786227 PGW99_RS07020 WP_273776865.1 1458358..1459068(+) (crp) [Acinetobacter sp. GSS19]
MTANFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDDREIVVAYLNPGDF
FGEMGLFEANPQRTAEVRTRDVCEIAEVSYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLIE
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIQTDGKAILIFDSSLEENEAVAEEEYEFEE

Nucleotide


Download         Length: 711 bp        

>NTDB_id=786227 PGW99_RS07020 WP_273776865.1 1458358..1459068(+) (crp) [Acinetobacter sp. GSS19]
ATGACTGCAAACTTTTCACAACTTAGTACCGATGCTTTGTCTCCCGGCCAATTACCAGAATCAGTCAAGGCATTATTAAA
ACGCGCGTATATTAACCGCTATCCAAAACGTACCACTATTGTTGATGCAGGAACAGAGTCAAAATCTTTATATCTAATTT
TAAAAGGTTCTGTTTCCATCATTTTGCGGGAAGATGATGACCGCGAAATCGTAGTGGCATATTTGAATCCTGGGGATTTT
TTTGGGGAAATGGGATTATTTGAGGCCAATCCACAACGTACTGCTGAAGTGCGTACACGTGATGTGTGTGAGATTGCCGA
AGTCAGCTATGACAACTTCCATGAGCTCAGCAAACAATACCCGGATTTGAGCTATGCGGTGTTTGCACAGCTGGTGCGTC
GTTTAAAAAATACGACACGTAAAGTCACTGACTTAGCCTTTATCGATGTTTCTGGACGTATCGCACGCTGCCTGATTGAG
CTATCCTCACAACCAGAAGCGATGATTTTGCCAAATGGCCGCCAGATTCGCATTACCCGTCAAGAAATTGGCCGTATTGT
TGGCTGTTCACGTGAAATGGTTGGCCGCGTTCTGAAGACCCTCGAAGAGCAGGGTATGATTCAGACAGATGGTAAAGCCA
TCTTGATCTTCGATAGTTCGCTTGAAGAAAATGAAGCCGTGGCGGAAGAAGAATATGAGTTTGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

92.797

100

0.928
  crp Vibrio cholerae strain A1552

46.86

87.712

0.411
  crp Haemophilus influenzae Rd KW20

47.179

82.627

0.39