Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   QAP04_RS02975 Genome accession   NZ_CP130623
Coordinates   614432..614983 (+) Length   183 a.a.
NCBI ID   WP_187866547.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 609432..619983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP04_RS02960 (QAP04_02950) cysS 609611..611008 (-) 1398 WP_373961675.1 cysteine--tRNA ligase -
  QAP04_RS02965 (QAP04_02955) murJ 611009..612469 (-) 1461 WP_373961676.1 murein biosynthesis integral membrane protein MurJ -
  QAP04_RS02970 (QAP04_02960) - 612562..614406 (+) 1845 WP_373961677.1 hypothetical protein -
  QAP04_RS02975 (QAP04_02965) ruvA 614432..614983 (+) 552 WP_187866547.1 Holliday junction branch migration protein RuvA Machinery gene
  QAP04_RS02980 (QAP04_02970) - 615060..616474 (+) 1415 Protein_567 DUF3519 domain-containing protein -
  QAP04_RS02985 (QAP04_02975) - 616551..616835 (+) 285 Protein_568 DUF1542 domain-containing protein -
  QAP04_RS02990 (QAP04_02980) - 617133..618269 (-) 1137 WP_373961678.1 TrkA family potassium uptake protein -
  QAP04_RS02995 (QAP04_02985) rpmB 618452..618640 (-) 189 WP_121280313.1 50S ribosomal protein L28 -
  QAP04_RS03000 (QAP04_02990) - 618740..619582 (-) 843 WP_373961679.1 HpaA family protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20176.79 Da        Isoelectric Point: 9.4495

>NTDB_id=786008 QAP04_RS02975 WP_187866547.1 614432..614983(+) (ruvA) [Helicobacter pylori strain BS04]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTAALLQAGQKARLKILQVIKEDAHLLYGFLEEGEKILFERLLKINGV
GGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDENRPARNEVFLALESLGFKSTEINQV
LKTLKPNLSIEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=786008 QAP04_RS02975 WP_187866547.1 614432..614983(+) (ruvA) [Helicobacter pylori strain BS04]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAGGTTTCTATGCGAACGGCTGCTTTGCTTCAAGCGGGTCAAAAAGCGCGTTTGAAAATCTTACAAGTGATCAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGGGCGAAAAAATCCTTTTTGAAAGGCTTTTGAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAGCATTATCGCCACCAAAGAAGTCAA
AAGACTCCAACAAGTCCCAGGCATAGGGAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAAACAGACCCGCACGCAATGAGGTTTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCACTGAAATCAATCAAGTT
TTAAAAACCCTAAAACCCAATCTCAGCATAGAAGCAGCGATTAAAGAAGCCTTACAACAATTGCGCTCTTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(139-181)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

98.361

100

0.984
  ruvA Streptococcus pneumoniae TIGR4

33.846

100

0.361
  ruvA Streptococcus pneumoniae R6

33.846

100

0.361
  ruvA Streptococcus pneumoniae D39

33.846

100

0.361