Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   QAP04_RS02015 Genome accession   NZ_CP130623
Coordinates   400405..402381 (+) Length   658 a.a.
NCBI ID   WP_373961557.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 395405..407381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP04_RS01995 (QAP04_01985) - 396373..397143 (+) 771 WP_373961555.1 HP1117 family Sel1-like repeat protein -
  QAP04_RS02000 (QAP04_01990) - 397380..397580 (-) 201 WP_100969131.1 hypothetical protein -
  QAP04_RS02005 (QAP04_01995) - 397549..399786 (+) 2238 WP_373961790.1 DUF3519 domain-containing protein -
  QAP04_RS02010 (QAP04_02000) - 399783..400355 (+) 573 WP_373961556.1 DUF1542 domain-containing protein -
  QAP04_RS02015 (QAP04_02005) uvrB 400405..402381 (+) 1977 WP_373961557.1 excinuclease ABC subunit UvrB Machinery gene
  QAP04_RS02020 (QAP04_02010) - 402391..403224 (-) 834 WP_373961558.1 outer membrane protein -
  QAP04_RS02025 (QAP04_02015) purB 403290..404612 (-) 1323 WP_373961559.1 adenylosuccinate lyase -
  QAP04_RS02030 (QAP04_02020) - 404722..405666 (-) 945 WP_000238150.1 thiamine pyrophosphate-dependent enzyme -
  QAP04_RS02035 (QAP04_02025) - 405679..406902 (-) 1224 WP_373961560.1 2-oxoacid:ferredoxin oxidoreductase subunit alpha -
  QAP04_RS02040 (QAP04_02030) - 406912..407304 (-) 393 WP_000656177.1 4Fe-4S dicluster-binding protein -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 75969.43 Da        Isoelectric Point: 6.7307

>NTDB_id=786007 QAP04_RS02015 WP_373961557.1 400405..402381(+) (uvrB) [Helicobacter pylori strain BS04]
MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIMSHNKTLCAQLYSEFKAFF
PHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLRLSTTTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKI
KVGEKRAYKSFLLKLVEMGYSRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSV
MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVCKGIENYARHFTGKAPNET
PFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNK
LELELSKKNVAEQIIRPTGLLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMHS
EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRAARNANGKVLLYAKKTT
QSMQKAFEVTSYRRAKQEEFNKLHYITPKTVTRALEEELKLRDDEIKIAKALKKDKMPKSEREKIIKELDKKMRECAKNL
DFEEAMRLRDEIAQLRTL

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=786007 QAP04_RS02015 WP_373961557.1 400405..402381(+) (uvrB) [Helicobacter pylori strain BS04]
ATGCCTTTATTTGATTTAAAAAGCCCTTATCCACCAGCAGGTGATCAGCCCCAAGCCATAGAAGCCTTAACGAAAAGCTT
GAAAAATAACAACCATTATCAAACTTTAGTGGGGGTTACAGGGAGCGGTAAGACTTATACGATGGCCAATATCATCGCTC
AAACCAATAAACCCGCTTTGATCATGAGCCATAATAAGACCTTATGCGCGCAGCTCTATAGCGAATTTAAGGCGTTTTTC
CCGCATAATAGGGTGGAGTATTTTATCTCACACTTCGATTACTACCAGCCTGAAAGCTATATCCCTAGAAGGGATTTATT
CATTGAAAAAGACAGCTCTATTAACGATGATTTAGAGCGTTTAAGATTGAGCACGACCACCTCACTTTTAGGTTATGATG
ATGTGATTGTGATAGCGAGCGTTTCGGCTAATTATGGTTTGGGTAACCCTGAAGAATATTTAAAAGTCATGGAAAAGATC
AAAGTGGGTGAGAAGCGTGCTTATAAGAGCTTTTTACTCAAGCTAGTAGAAATGGGTTATAGCCGTAATGAAGTGGTGTT
TGATAGGGGGAGCTTTAGAGCGACCGGAGAATGCGTGGATATTTTCCCCGCTTATAATGATGCTGAATTTATTAGGATTG
AATTTTTTGGCGATGAGATAGAAAGGATTGCTGTCTTTGACGCTTTAGAAAAAAATGAAATCAAGCGCTTGGATTCTGTC
ATGCTTTATGCGGCCAGTCAATTTGCTGTAGGGAGTGAAAGATTGAACTTAGCCATTAAAAGCATTGAAGATGAACTCGC
TTTAAGGTTGAAATTTTTTAAAGAGCAGGATAAAATGCTTGAATACAACCGCCTCAAACAACGCACCGAGCATGATTTAG
AAATGATTAGCGCAACCGGTGTGTGTAAGGGCATTGAAAATTACGCACGCCATTTTACAGGTAAAGCCCCTAACGAAACG
CCTTTTTGTTTGTTTGATTATTTAGGGATATTTGAGCGGGAGTTTTTAGTCATTGTAGATGAAAGCCATGTGAGTTTGCC
GCAGTTTGGGGGGATGTATGCAGGGGATATGAGCAGGAAAAGCGTTTTAGTGGAATATGGTTTTAGATTGCCTAGTGCTT
TAGACAACCGCCCTTTAAAATTTGATGAATTTATCCATAAAAATTGCCAGTTCCTTTTTGTGTCCGCTACGCCCAATAAG
CTAGAATTAGAGCTTTCTAAAAAGAATGTCGCTGAGCAAATCATCCGCCCTACAGGGCTTTTAGACCCTAAATTTGAAGT
GCGAGACAGCGATAAGCAAGTCCAGGATTTATTTGATGAAATCAAGTTAGTGGTGGCTAGAGATGAAAGGGTGCTCATCA
CCACGCTCACTAAAAAAATGGCAGAAGAATTGTGCAAATATTATGCTGAATGGGGCTTGAAAGCGCGTTACATGCATAGT
GAAATTGATGCGATTGAACGAAATCACATCATCCGCTCTTTAAGGCTTAAAGAATTTGACATTTTAATAGGGATCAATCT
TTTAAGAGAAGGGCTGGATTTGCCTGAAGTCTCTTTAGTAGCGATCATGGATGCGGATAAAGAAGGGTTTTTAAGGAGTG
AAACAAGCCTCATTCAAACCATGGGGCGAGCCGCTAGAAACGCTAATGGCAAGGTTTTATTATACGCTAAAAAAACCACT
CAAAGCATGCAAAAAGCCTTTGAAGTTACTAGCTACAGGCGCGCTAAGCAAGAAGAGTTCAATAAGCTTCATTATATCAC
TCCCAAAACCGTTACCCGCGCTTTAGAAGAGGAATTGAAATTAAGAGACGATGAGATTAAAATCGCTAAAGCCTTAAAAA
AGGACAAAATGCCTAAAAGCGAAAGGGAAAAAATCATTAAAGAATTGGATAAAAAAATGCGAGAATGCGCGAAAAATTTG
GATTTTGAAGAAGCGATGCGCTTGAGAGATGAAATCGCTCAATTAAGAACGCTTTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(445-547)

UvrB/uvrC motif (UVR)

(623-657)

Ultra-violet resistance protein B (UvrB)

(554-595)

UvrB interaction domain (UvrB_inter)

(159-248)

Type III restriction enzyme, res subunit (ResIII)

(15-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

49.321

100

0.497
  uvrB Streptococcus pneumoniae D39

49.321

100

0.497
  uvrB Streptococcus pneumoniae TIGR4

49.321

100

0.497