Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   LLID5_RS01830 Genome accession   NZ_AP025701
Coordinates   371911..372723 (-) Length   270 a.a.
NCBI ID   WP_003131583.1    Uniprot ID   Q9CIG7
Organism   Lactococcus lactis strain ID-5     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 366911..377723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLID5_RS01805 (LLID5_03490) ytpR 367136..367762 (+) 627 WP_003131594.1 YtpR family tRNA-binding protein -
  LLID5_RS01810 (LLID5_03500) - 367925..369265 (+) 1341 WP_023188995.1 H2O-forming NADH oxidase -
  LLID5_RS01815 (LLID5_03510) ssbB 369355..369744 (+) 390 WP_010905314.1 single-stranded DNA-binding protein Machinery gene
  LLID5_RS01820 (LLID5_03520) groES 369864..370148 (+) 285 WP_003131589.1 co-chaperone GroES -
  LLID5_RS01825 (LLID5_03530) groL 370236..371864 (+) 1629 WP_003131585.1 chaperonin GroEL -
  LLID5_RS01830 (LLID5_03540) vicX 371911..372723 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  LLID5_RS01835 (LLID5_03550) vicK 372892..374334 (-) 1443 WP_010905315.1 cell wall metabolism sensor histidine kinase WalK Regulator
  LLID5_RS01840 (LLID5_03560) yycF 374327..375028 (-) 702 WP_003131580.1 response regulator YycF -
  LLID5_RS01845 (LLID5_03570) tmk 375206..375841 (+) 636 WP_012897230.1 dTMP kinase -
  LLID5_RS01850 (LLID5_03580) - 375974..376834 (+) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  LLID5_RS01855 (LLID5_03590) yaaT 376886..377668 (+) 783 WP_010905316.1 stage 0 sporulation family protein Regulator

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30522.37 Da        Isoelectric Point: 5.8494

>NTDB_id=78600 LLID5_RS01830 WP_003131583.1 371911..372723(-) (vicX) [Lactococcus lactis strain ID-5]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDIESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=78600 LLID5_RS01830 WP_003131583.1 371911..372723(-) (vicX) [Lactococcus lactis strain ID-5]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACTCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGACATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAGGGGATTGGTGTTTTAGCAAGAAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATATTGAATCTTTCGGCGTGAGTCACGATGCTATCGCAC
CACAGTTTTATCGTTTCATGAAAGATAACAAAAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCAGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCCTATCCTTG
GCGGACAAAGCAACGTATCCTAAGTGACCAAGGCCACTTATCTAATGAGGACGGCGCTGAGGCTGCTTTTAGTATTCATG
GTAATAAGACAAAACGAATTTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAACTTGCTCATCTTACTATGGAT
GGTTACTTACAGCAACATGATGTCGATACCAAAAAGGACTTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.519

100

0.685