Detailed information    

insolico Bioinformatically predicted

Overview

Name   yaaT   Type   Regulator
Locus tag   LLID5_RS01855 Genome accession   NZ_AP025701
Coordinates   376886..377668 (+) Length   260 a.a.
NCBI ID   WP_010905316.1    Uniprot ID   Q9CIG2
Organism   Lactococcus lactis strain ID-5     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 371886..382668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLID5_RS01830 (LLID5_03540) vicX 371911..372723 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  LLID5_RS01835 (LLID5_03550) vicK 372892..374334 (-) 1443 WP_010905315.1 cell wall metabolism sensor histidine kinase WalK Regulator
  LLID5_RS01840 (LLID5_03560) yycF 374327..375028 (-) 702 WP_003131580.1 response regulator YycF -
  LLID5_RS01845 (LLID5_03570) tmk 375206..375841 (+) 636 WP_012897230.1 dTMP kinase -
  LLID5_RS01850 (LLID5_03580) - 375974..376834 (+) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  LLID5_RS01855 (LLID5_03590) yaaT 376886..377668 (+) 783 WP_010905316.1 stage 0 sporulation family protein Regulator
  LLID5_RS01860 (LLID5_03600) yabA 377661..377987 (+) 327 WP_011675472.1 DNA replication initiation control protein YabA -
  LLID5_RS01865 (LLID5_03610) rsmI 377987..378862 (+) 876 WP_058204088.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LLID5_RS01870 (LLID5_03620) - 378939..379130 (-) 192 WP_012897234.1 hypothetical protein -
  LLID5_RS01875 (LLID5_03630) mvk 379193..380125 (-) 933 WP_003131564.1 mevalonate kinase -
  LLID5_RS01880 (LLID5_03640) mvaD 380431..381387 (+) 957 WP_251919048.1 diphosphomevalonate decarboxylase -
  LLID5_RS01885 (LLID5_03650) - 381374..382363 (+) 990 WP_029344853.1 mevalonate kinase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 29803.27 Da        Isoelectric Point: 6.0566

>NTDB_id=78603 LLID5_RS01855 WP_010905316.1 376886..377668(+) (yaaT) [Lactococcus lactis strain ID-5]
MIYEIKFAHGESNVFAISDIELAPQTEVILRSDKGNFYGKIVREISEEANLEIHHTIVREVNEDDLQVIAKLEERSKQAK
DKVRQLVIEQGLEMKIIDVAYNFDQMQLFISFTAENRVDFRLLLRELATTFRIRIELRQIGPRDAAKIHGGLGPCGRPLC
CSEFVYEFPNVSIKMAKNQNLSLKQNKLNGLCGRLMCCLTYEDSFYKEAQQLFPDFGEFVTTSEGKGKVVGLNVLKNRVK
IRFGEYSKDFELAEIEVNHG

Nucleotide


Download         Length: 783 bp        

>NTDB_id=78603 LLID5_RS01855 WP_010905316.1 376886..377668(+) (yaaT) [Lactococcus lactis strain ID-5]
ATGATTTATGAAATAAAATTTGCACATGGCGAATCAAATGTATTTGCAATAAGTGATATAGAACTTGCTCCACAAACAGA
AGTTATCCTTCGTTCAGATAAGGGAAACTTTTACGGAAAAATTGTACGTGAAATTTCTGAAGAAGCGAATCTTGAAATTC
ACCACACGATTGTGCGTGAAGTAAATGAGGATGATCTCCAAGTTATTGCAAAACTTGAAGAACGTTCTAAACAAGCCAAA
GATAAAGTTCGCCAACTTGTCATCGAACAAGGTTTGGAAATGAAAATTATTGATGTTGCTTATAATTTCGACCAAATGCA
ACTTTTTATTTCGTTTACAGCAGAGAATCGTGTTGATTTTCGATTGCTTTTGCGTGAGTTGGCAACAACTTTTAGAATTA
GGATTGAACTTCGCCAAATTGGGCCAAGAGATGCGGCTAAAATTCATGGTGGACTTGGACCTTGTGGACGTCCTTTGTGC
TGTTCTGAGTTTGTTTATGAATTTCCAAATGTTTCAATCAAAATGGCCAAAAATCAAAATCTATCTTTGAAACAAAATAA
ATTGAACGGTCTTTGCGGTCGTTTGATGTGCTGTTTAACTTATGAAGATAGTTTTTATAAAGAAGCCCAACAACTTTTCC
CAGATTTTGGTGAGTTTGTAACTACCTCAGAAGGAAAAGGAAAAGTTGTTGGCTTAAATGTTTTAAAAAATAGAGTAAAA
ATCCGCTTTGGAGAATATAGCAAGGATTTTGAACTTGCAGAAATTGAGGTGAATCATGGCTGA

Domains

Predicted by InterProScan.

PSP1 C-terminal conserved region (PSP1)

(56-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  yaaT Bacillus subtilis subsp. subtilis str. 168

46.119

84.231

0.388

Multiple sequence alignment