Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   GsuE55_RS01535 Genome accession   NZ_AP022557
Coordinates   335428..337785 (+) Length   785 a.a.
NCBI ID   WP_172418474.1    Uniprot ID   A0A679FKM0
Organism   Geobacillus subterraneus strain E55-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 330428..342785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GsuE55_RS01510 (GsuE55_03060) - 331087..331737 (+) 651 WP_172418471.1 YitT family protein -
  GsuE55_RS01515 (GsuE55_03070) - 331748..332164 (+) 417 WP_011232042.1 Rrf2 family transcriptional regulator -
  GsuE55_RS01520 (GsuE55_03090) - 332357..333499 (+) 1143 WP_172418472.1 cysteine desulfurase family protein -
  GsuE55_RS01525 (GsuE55_03100) mnmA 333516..334631 (+) 1116 WP_033018054.1 tRNA 2-thiouridine(34) synthase MnmA -
  GsuE55_RS01530 (GsuE55_03110) - 334749..335411 (+) 663 WP_172418473.1 tetratricopeptide repeat protein -
  GsuE55_RS01535 (GsuE55_03120) recD2 335428..337785 (+) 2358 WP_172418474.1 ATP-dependent RecD-like DNA helicase Machinery gene
  GsuE55_RS01540 (GsuE55_03130) - 337811..338284 (+) 474 WP_061912331.1 PRC-barrel domain-containing protein -
  GsuE55_RS01545 (GsuE55_03140) - 338300..338491 (+) 192 WP_033018049.1 hypothetical protein -
  GsuE55_RS01550 (GsuE55_03150) - 338503..338637 (+) 135 WP_081897240.1 YrzQ family protein -
  GsuE55_RS01555 (GsuE55_03160) - 338756..339817 (+) 1062 WP_061912330.1 AI-2E family transporter -
  GsuE55_RS01560 (GsuE55_03170) alaS 340135..342771 (+) 2637 WP_172418475.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 86136.84 Da        Isoelectric Point: 5.3427

>NTDB_id=78599 GsuE55_RS01535 WP_172418474.1 335428..337785(+) (recD2) [Geobacillus subterraneus strain E55-1]
MQEQQTLAIEGCTFIKGTCISVIFHNEETLYTVVRIRVEETNEAPVEEEVIVTGHFPRISEGDIYVFYGQFRHHPRFGRQ
YAASQFRKQLPNTKEGIIQYLSSGLFKGIGKKTAAAIAEALGEQAIAVILRDPAALERIPKLSKQKAKQLYETLRAHEGL
EQTMITLAQLGFGPQLAMKIYQAYGEEAIEIIQANPYQLVEDIEGIGFGRADELGRQLGISGSHPARLRAASLFVLEQVC
LQEGHVYMAEEELVGRIAELLDGRPSGAVDGQAIQRTLLMLSEEGKLVVEQGRCYLPSLYFAEKGIVSNVKRLLRQTAAP
FAESEFLLALGALEERLGMQYAPQQKEAIQRALSSPLFILTGGPGTGKTTVIKGIVELFAALNGLSLDPARYQQGEPFPV
VLAAPTGRAAKRMSEATGLPAATIHRLLGWNGVEGFSRDEHEPLAGKLLVIDEMSMVDTWLANQLFKAVPNGMQVVLVGD
EDQLPSVGPGQVLKDLLESGVVPSVRLTDVYRQAEGSSIIELAHEVKRGAVPPDLTAPKADRSFIRCRAGQVVDVVRQIA
DNARKKGFSVKDIQVLAPMYRGPAGIDRLNKALQELFNPPSAGKRELAAGEVVYRVGDKVLQLVNQPEDNVFNGDIGEVV
AIFYAKENTDKQDLLVVSFDGVEVTYTRQELSQITHAYCCSVHKAQGSEFPIVILPVVKSYYRMLKRNLLYTAVTRSKQF
LILCGEEEAFRAGVAKQSDGVRRTALAEKLTAAMAPVVEVELPLEDANVGMENVTPYDFMSDESS

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=78599 GsuE55_RS01535 WP_172418474.1 335428..337785(+) (recD2) [Geobacillus subterraneus strain E55-1]
TTGCAAGAGCAGCAAACGCTGGCCATTGAGGGGTGCACCTTTATTAAAGGAACGTGCATATCCGTCATTTTCCATAACGA
AGAAACGCTTTACACCGTTGTCCGCATTCGCGTTGAGGAAACGAACGAAGCGCCGGTTGAAGAGGAAGTGATCGTCACCG
GCCATTTCCCGCGGATCAGCGAGGGAGACATTTATGTGTTTTATGGTCAATTCCGCCATCATCCGCGCTTTGGCCGCCAG
TATGCGGCGAGCCAGTTCCGCAAACAGCTTCCCAACACGAAAGAAGGAATCATTCAGTATTTATCAAGCGGCTTGTTTAA
AGGGATCGGCAAAAAAACGGCTGCGGCTATCGCCGAAGCGCTCGGCGAGCAGGCGATTGCCGTGATTTTGCGCGATCCAG
CGGCGCTCGAGCGCATTCCGAAACTGTCCAAACAAAAGGCCAAGCAGCTGTACGAAACGCTCCGCGCCCACGAAGGGCTT
GAGCAGACGATGATCACCCTTGCTCAGCTCGGCTTCGGCCCCCAGCTGGCCATGAAAATTTACCAAGCGTACGGCGAGGA
AGCGATCGAAATCATCCAAGCCAATCCGTATCAGCTCGTCGAAGACATTGAAGGGATCGGGTTCGGTCGCGCCGATGAGC
TTGGGCGGCAGCTCGGCATTTCCGGAAGCCACCCGGCTCGGCTGCGCGCCGCTTCCTTGTTTGTCCTCGAGCAAGTTTGC
CTGCAGGAAGGGCATGTGTACATGGCCGAGGAAGAGCTGGTCGGCCGCATTGCTGAACTGCTGGATGGCCGGCCGAGCGG
GGCGGTCGACGGACAAGCCATTCAACGGACGCTGCTGATGTTGAGTGAAGAAGGAAAACTGGTCGTTGAGCAAGGCCGTT
GTTATCTCCCGTCGCTTTACTTTGCCGAAAAAGGCATCGTTTCCAACGTCAAGCGGCTGCTCCGGCAAACGGCGGCGCCG
TTTGCGGAATCGGAGTTTTTGCTGGCGCTCGGGGCGCTTGAAGAGCGGCTTGGCATGCAGTACGCGCCCCAGCAAAAAGA
GGCGATTCAGCGGGCGCTTTCCTCCCCGTTGTTCATTTTAACCGGCGGTCCGGGCACGGGAAAAACAACGGTCATCAAAG
GGATTGTCGAGCTGTTCGCCGCTCTTAACGGCTTATCGTTAGATCCGGCCCGCTACCAACAAGGTGAGCCGTTCCCGGTC
GTGCTCGCCGCCCCGACCGGACGGGCGGCCAAGCGGATGAGCGAGGCGACCGGCCTGCCGGCGGCGACGATTCATCGGCT
GCTCGGTTGGAACGGAGTGGAAGGGTTCAGCCGCGATGAACATGAACCGCTTGCCGGCAAGCTGCTTGTCATCGATGAAA
TGTCGATGGTCGACACATGGCTGGCTAATCAGCTGTTCAAAGCGGTGCCAAACGGCATGCAAGTCGTGCTGGTCGGCGAT
GAAGACCAGCTGCCATCCGTCGGGCCCGGCCAAGTGCTGAAAGATTTGCTCGAGTCCGGTGTCGTTCCTTCGGTGCGGCT
GACAGACGTGTACCGTCAGGCGGAAGGATCGTCGATCATCGAGCTCGCTCATGAGGTAAAGCGCGGCGCCGTGCCGCCCG
ATTTGACCGCGCCAAAGGCGGATCGCTCGTTCATTCGCTGCCGCGCCGGCCAAGTCGTGGATGTCGTCCGGCAAATCGCG
GACAATGCGCGAAAAAAAGGCTTTTCGGTCAAAGATATTCAAGTGCTCGCCCCGATGTACCGAGGCCCGGCCGGCATTGA
TCGGCTCAATAAAGCGCTTCAAGAGCTCTTCAATCCGCCATCCGCCGGGAAGCGGGAACTGGCGGCCGGCGAGGTGGTGT
ACCGCGTCGGCGACAAGGTGCTTCAGCTCGTCAATCAGCCGGAAGACAACGTGTTTAACGGCGATATCGGCGAAGTCGTT
GCCATTTTTTACGCGAAAGAGAACACCGACAAGCAAGACTTGCTCGTTGTCTCGTTTGACGGCGTGGAAGTGACCTACAC
CCGGCAAGAGCTGTCGCAAATCACCCATGCGTATTGCTGCTCTGTGCATAAAGCGCAAGGAAGCGAATTCCCTATCGTCA
TTTTGCCCGTCGTGAAAAGCTACTATCGGATGTTGAAGCGGAACTTGCTGTATACGGCGGTGACGAGAAGCAAACAATTT
TTGATTTTATGCGGCGAAGAGGAAGCGTTTCGGGCCGGCGTCGCCAAGCAGAGCGACGGGGTGCGGCGGACGGCGCTGGC
GGAAAAACTGACGGCGGCGATGGCGCCGGTTGTCGAAGTCGAACTGCCGCTTGAGGATGCGAACGTCGGAATGGAAAACG
TTACGCCGTATGACTTTATGAGCGATGAGTCAAGCTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

Helix-hairpin-helix domain (HHH_5)

(107-155)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

AAA domain (AAA_30)

(340-548)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A679FKM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

59.724

100

0.606

Multiple sequence alignment