Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   LLL8_RS11860 Genome accession   NZ_AP025700
Coordinates   2384248..2384841 (-) Length   197 a.a.
NCBI ID   WP_003131995.1    Uniprot ID   Q9CDL2
Organism   Lactococcus lactis strain L8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2379248..2389841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLL8_RS11830 (LLL8_23110) - 2379451..2379615 (-) 165 WP_003131988.1 hypothetical protein -
  LLL8_RS11835 (LLL8_23120) - 2379720..2380337 (-) 618 WP_021723261.1 ABC transporter ATP-binding protein -
  LLL8_RS11840 (LLL8_23130) - 2380334..2381521 (-) 1188 WP_251899986.1 ABC transporter permease -
  LLL8_RS11845 (LLL8_23140) - 2381588..2381878 (-) 291 WP_251899987.1 hypothetical protein -
  LLL8_RS11850 (LLL8_23150) - 2382098..2382919 (-) 822 WP_235586094.1 transcriptional regulator -
  LLL8_RS11855 (LLL8_23170) ruvB 2383120..2384121 (-) 1002 WP_003131994.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  LLL8_RS11860 (LLL8_23180) ruvA 2384248..2384841 (-) 594 WP_003131995.1 Holliday junction branch migration protein RuvA Machinery gene
  LLL8_RS11865 (LLL8_23190) hexB 2384951..2386921 (-) 1971 WP_032947013.1 DNA mismatch repair endonuclease MutL Machinery gene
  LLL8_RS11870 (LLL8_23200) - 2387050..2387745 (-) 696 WP_012898700.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21166.73 Da        Isoelectric Point: 5.8174

>NTDB_id=78585 LLL8_RS11860 WP_003131995.1 2384248..2384841(-) (ruvA) [Lactococcus lactis strain L8]
MFEYLNGKLVKISPTNIVIDVAGIGYLISVANPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNEAEKALFLRLISVSGI
GPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKTAMQMVLDLAGKFDATGTVGISLLDAGPAGNLALEEAIEALQ
ALGYKATELKKIEKKLAQETGLTSEEYIKSALKLMMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=78585 LLL8_RS11860 WP_003131995.1 2384248..2384841(-) (ruvA) [Lactococcus lactis strain L8]
ATGTTTGAATATCTTAATGGAAAATTAGTAAAAATTTCCCCAACAAATATTGTAATTGATGTAGCAGGAATTGGCTATCT
TATCAGTGTAGCTAACCCTTACGCTTGGTCGGCTTTGATGAACACAGAAGTAAAAATTTATGTTCATCAAGTCATTCGTG
AAGATGCCCACAGTCTCTATGGTTTTGTTAACGAGGCCGAAAAAGCTTTATTCTTACGTCTGATCAGTGTTTCTGGGATT
GGGCCAAAATCAGCTCTGGCCATCATTGCGGCGGCTGATAACGAAGGTTTAATCACTGCTATTGACAATAGTGATATCAA
GTATTTAACTAAATTTCCAGGAGTTGGTAAAAAAACAGCCATGCAGATGGTGCTTGATTTGGCTGGGAAATTTGATGCGA
CAGGAACTGTAGGTATTTCTCTTCTTGATGCTGGACCTGCTGGCAATCTTGCTTTGGAAGAAGCGATTGAAGCGCTGCAA
GCTTTGGGTTATAAAGCAACAGAATTGAAGAAAATTGAGAAAAAATTAGCTCAAGAAACAGGTCTGACCAGCGAAGAATA
TATCAAATCAGCCTTAAAACTTATGATGAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-196)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CDL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

60.101

100

0.604
  ruvA Streptococcus pneumoniae R6

60.101

100

0.604
  ruvA Streptococcus pneumoniae D39

60.101

100

0.604
  ruvA Bacillus subtilis subsp. subtilis str. 168

44.828

100

0.462