Detailed information NTG0785828

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PSH91_RS04105
• Genome accession: NZ_CP117465
• Coordinates: 928603..929949 (-)
• Length: 448 a.a.
• NCBI ID: WP_076386371.1
• Uniprot ID: -
• Organism: Pseudomonas sp. FP1154
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 923603..934949

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH91_RS04090 (PSH91_04090)	-	925250..925651 (+)	402	WP_076386375.1	type IV pilin protein	-
PSH91_RS04095 (PSH91_04095)	thiO	925707..926807 (+)	1101	WP_047230179.1	glycine oxidase ThiO	-
PSH91_RS04100 (PSH91_04100)	-	928141..928506 (+)	366	WP_139051190.1	DUF6124 family protein	-
PSH91_RS04105 (PSH91_04105)	pilR	928603..929949 (-)	1347	WP_076386371.1	sigma-54 dependent transcriptional regulator	Regulator
PSH91_RS04110 (PSH91_04110)	pilS	929946..931538 (-)	1593	WP_139051188.1	nitrogen regulation protein NR(II)	Regulator
PSH91_RS04115 (PSH91_04115)	-	931528..931761 (-)	234	WP_047229875.1	PP0621 family protein	-
PSH91_RS04120 (PSH91_04120)	-	931885..932901 (-)	1017	WP_047229874.1	outer membrane protein assembly factor BamD	-
PSH91_RS04125 (PSH91_04125)	rluD	933053..934015 (+)	963	WP_047229873.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PSH91_RS04130 (PSH91_04130)	pgeF	934012..934737 (+)	726	WP_305467384.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50223.65 Da
• Isoelectric Point: 6.3576

>NTDB_id=785828 PSH91_RS04105 WP_076386371.1 928603..929949(-) (pilR) [Pseudomonas sp. FP1154]
MTTRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAENLAQARALLAEDTFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPSVAIPAASIERCLLGDSPPMHNVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRSAQRFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDAEVTAGRFRQDLYYRLNVIELRVPPLRERREDIESLA
NHTLQRLAANTGSPAVKLHPQALDALRNYRFPGNVRELENMLERAYTLCEHQLIEAHDLRLAEGISTTDAGSPDLMRVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=785828 PSH91_RS04105 WP_076386371.1 928603..929949(-) (pilR) [Pseudomonas sp. FP1154]
TTGACTACGCGCTCACGGCAACGAATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATTACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCGAGAACCTTGCCCAGGCCCGGGCCCTGCTGGCTGAAGACACCTTTGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACTGGCCTGGAGCTGGTGCAACATATCCAGCAACGCTACCCGCAATTGCCC
GTAGCAATGATCACCGCCTACGGGAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGCGCCTTCGACTTTCTGACCAA
ACCGGTCGACCTGGGACGGCTGCGTGAGCTGGTCACCAGCGCATTACGCCTGCCGTCGGTCGCCATCCCGGCGGCGTCCA
TCGAGCGCTGTCTGCTGGGCGACTCCCCGCCGATGCACAACGTCCGCAAACAGATCGAAAAACTCGCTCGCAGTCAGGCG
CCGGTCTACATCAGCGGGGAATCGGGTTGCGGCAAGGAACTGGTCGCCCGGTTGATCCATGAGCAAGGCCCGCGTTCCGC
CCAGCGTTTTGTGCCGGTCAACTGTGGGGCGATTCCCACGGAGCTGATGGAAAGCGAGTTTTTCGGCCATCGAAAAGGCA
GCTTCAGCGGCGCCATCGAAGACAAACCGGGGCTGTTCCAGGCCGCCCACGGCGGGACCTTGTTCCTTGACGAAGTGGCC
GACCTGCCCCTGGCGATGCAAGTCAAATTGCTGCGCGCCATCCAGGAAAAAGCCGTGCGGGCCGTTGGCGGCCAGCAGGA
AGAAGTGGTGGATGTACGAATTCTTTGCGCCACCCACAAGGACCTGGACGCCGAAGTCACCGCCGGGCGCTTTCGCCAGG
ATCTGTACTATCGACTCAACGTCATCGAACTGCGCGTCCCGCCGCTGCGCGAACGCCGCGAAGACATCGAATCGCTCGCC
AATCACACCCTCCAGCGCCTGGCCGCCAACACCGGCAGCCCCGCGGTCAAGCTCCATCCCCAAGCCCTGGACGCCCTTCG
AAACTACCGCTTTCCGGGCAACGTTCGGGAACTGGAAAACATGCTCGAACGCGCCTACACCCTTTGCGAGCACCAGTTGA
TCGAAGCCCACGACCTGCGCCTGGCCGAGGGCATCAGCACCACCGACGCAGGCAGCCCCGACCTGATGCGGGTCGATAAC
CTGGAAGACTATCTGGAGGACGTCGAACGCAAACTCATCCTCCAGGCTTTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCCCAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGTTGGGGTTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Response regulator receiver domain (Response_reg) (9-118)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	78.604	99.107	0.779
pilR	Acinetobacter baumannii strain A118	49.891	100	0.511